Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | CDX77061 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | CDY04475 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | CDY48192 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | CDY56413 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | CDY62055 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41384 | Canola | nucleus | 45.39 | 67.81 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 6.21 | 56.45 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 7.45 | 53.16 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 28.37 | 51.53 |
| Bra009470.1-P | Field mustard | nucleus | 65.43 | 47.83 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 21.1 | 37.66 |
| CDY36200 | Canola | peroxisome | 0.62 | 36.84 |
| AT5G04290.1 | Thale cress | nucleus | 46.1 | 34.83 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 6.38 | 28.69 |
| KRH35991 | Soybean | nucleus | 35.37 | 27.48 |
| KRG90770 | Soybean | nucleus | 34.31 | 25.89 |
| CDY36201 | Canola | cytosol | 4.61 | 24.07 |
| Solyc11g008150.1.1 | Tomato | nucleus | 31.91 | 23.86 |
| CDY34005 | Canola | cytosol | 21.63 | 23.24 |
| CDX83142 | Canola | cytosol | 21.28 | 23.05 |
| CDY61565 | Canola | nucleus | 19.95 | 22.96 |
| CDX84655 | Canola | nucleus | 20.39 | 22.53 |
| CDX75158 | Canola | cytosol | 13.12 | 22.26 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 26.68 | 21.58 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 28.72 | 20.94 |
| Os05t0506200-01 | Rice | nucleus | 10.73 | 20.65 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 28.46 | 20.43 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 28.81 | 20.38 |
| Zm00001d010719_P002 | Maize | nucleus | 28.46 | 20.16 |
| OQU78267 | Sorghum | nucleus | 27.57 | 19.55 |
| CDY36202 | Canola | cytosol, extracellular | 2.39 | 19.15 |
| Zm00001d038644_P004 | Maize | nucleus | 27.04 | 18.96 |
| CDX75160 | Canola | cytosol | 4.26 | 16.67 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:A0A078BZT3 | EnsemblPlants:CDX70245 | ProteinID:CDX70245 |
| ProteinID:CDX70245.1 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00136383001 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom |
| InterPro:NGN_dom_sf | PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00738 |
| SMART:SM00739 | InterPro:TF_Spt5_NGN-domain | UniParc:UPI0004EEAA4D | SEG:seg | : | : |
Description
BnaA10g25940D
Coordinates
chrLK031790:-:3753042..3759214
Molecular Weight (calculated)
120734.0 Da
IEP (calculated)
5.881
GRAVY (calculated)
-0.953
Length
1128 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDRKGKGKQI AGAGSSSGKK RKGGGGVEFR DEGLRINSKR KKPGVLQFFE ESAEVGYYGG SSDEECDMDD LFNADMEDEP EVETSGKDDK GGKGKGSSSF
0101: VFPKEEEMNE DNYDRMMEER YKPGSGFVRY AADDVKSSIE MDALVPTAHD PPIWKIKCAI GREKHSVFCL MHKFVELRKI GTKLKILSVF FVEHVKGFIF
0201: IEADKEQDVL EACMSLNGIY ATRMMLLPKS EAPHLLTVQR KTKTFSEGTW ARIKSGKYKG DLAQVVAVSD TRGKALIKLI PRIDIAALTQ KYGGGVIAQK
0301: GLNPAPRLIS SSELEEFRPI IQVRRDRDTG MTFEHLDSLM LKDGFLYKKV SLDSLTSCGV KPSKEEILKF TPLEEKETGD VEWISEIYGE EKKKKSIPAG
0401: KGVEKGEGSG GGKGEGSGGG KGEGSSESKS ESSHELYNLV CFSRKDFGLI VGVDDKGDGY KVLKEGSDGP VVVSVGKKEM QEPFDSKFSA LDLNNKQISI
0501: GDVVKIAKGP SEGKQGVVRQ VYRGIIFLYA EGEEENGGYL CCKSQSCEKV KLFTEESNDK TGGFDASAFG DSASSPKSPL SPEKEWQQQP KEKYINSNQG
0601: DKGSMYSIGQ KLRIRVGPLK GYLCRVIALR YSDITVKLDS QHKIFTVKSE HLAEVRDRNT VPSMSGDAGM GSFQQFDMLG TEGNNGDWAK GAGTSEDNTS
0701: TWGSTAAENK PDSAGDQSGG WNAWGKPPAP EASTVGAWGD ARASTSNVED SGSWGKHGGS SDGNKQNDDS VWGKLVEESS QKKEESSWGK KTGSDSDLGK
0801: GNGESTWGNK DGNSSASNKE GVSWGQHDKG SDGDQGGSSW GKKNDSVKDD GGSSWGKKDD GGSTWGKKDD GGSSWGKKVD DVIKDDGGSS WDKKIEGNKD
0901: DGGSSWGKKV DCNKDDGGSS WGKKVEGNKD DGGSSWGKKV DCNKDDGGSS WGKKDDGGPS WNKKDDGNKD DGGSAWGKKV ESGSSWGNKD GGSSWGNKDG
1001: GSSWAKKDDG GYSEQTFDRG GRGFGGRRGG GRRGGRDQFG RGRSFGHSED QAPWSKPGGG GGSSWGKQDS GGGGSSWGKD NETGENAGNN NDGWGKKPSD
1101: DVKTSGEADN AWGGKTNAGA SSSSGSAW
0101: VFPKEEEMNE DNYDRMMEER YKPGSGFVRY AADDVKSSIE MDALVPTAHD PPIWKIKCAI GREKHSVFCL MHKFVELRKI GTKLKILSVF FVEHVKGFIF
0201: IEADKEQDVL EACMSLNGIY ATRMMLLPKS EAPHLLTVQR KTKTFSEGTW ARIKSGKYKG DLAQVVAVSD TRGKALIKLI PRIDIAALTQ KYGGGVIAQK
0301: GLNPAPRLIS SSELEEFRPI IQVRRDRDTG MTFEHLDSLM LKDGFLYKKV SLDSLTSCGV KPSKEEILKF TPLEEKETGD VEWISEIYGE EKKKKSIPAG
0401: KGVEKGEGSG GGKGEGSGGG KGEGSSESKS ESSHELYNLV CFSRKDFGLI VGVDDKGDGY KVLKEGSDGP VVVSVGKKEM QEPFDSKFSA LDLNNKQISI
0501: GDVVKIAKGP SEGKQGVVRQ VYRGIIFLYA EGEEENGGYL CCKSQSCEKV KLFTEESNDK TGGFDASAFG DSASSPKSPL SPEKEWQQQP KEKYINSNQG
0601: DKGSMYSIGQ KLRIRVGPLK GYLCRVIALR YSDITVKLDS QHKIFTVKSE HLAEVRDRNT VPSMSGDAGM GSFQQFDMLG TEGNNGDWAK GAGTSEDNTS
0701: TWGSTAAENK PDSAGDQSGG WNAWGKPPAP EASTVGAWGD ARASTSNVED SGSWGKHGGS SDGNKQNDDS VWGKLVEESS QKKEESSWGK KTGSDSDLGK
0801: GNGESTWGNK DGNSSASNKE GVSWGQHDKG SDGDQGGSSW GKKNDSVKDD GGSSWGKKDD GGSTWGKKDD GGSSWGKKVD DVIKDDGGSS WDKKIEGNKD
0901: DGGSSWGKKV DCNKDDGGSS WGKKVEGNKD DGGSSWGKKV DCNKDDGGSS WGKKDDGGPS WNKKDDGNKD DGGSAWGKKV ESGSSWGNKD GGSSWGNKDG
1001: GSSWAKKDDG GYSEQTFDRG GRGFGGRRGG GRRGGRDQFG RGRSFGHSED QAPWSKPGGG GGSSWGKQDS GGGGSSWGKD NETGENAGNN NDGWGKKPSD
1101: DVKTSGEADN AWGGKTNAGA SSSSGSAW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.