Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G325500.1 | Wheat | nucleus | 79.31 | 87.96 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 82.61 | 81.35 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 77.25 | 74.92 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.4 | 54.84 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.78 | 48.42 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.65 | 45.57 |
| Zm00001d038644_P004 | Maize | nucleus | 44.02 | 42.32 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 16.87 | 42.03 |
| OQU78267 | Sorghum | nucleus | 41.95 | 40.79 |
| Zm00001d010719_P002 | Maize | nucleus | 41.89 | 40.7 |
| Os05t0506200-01 | Rice | nucleus | 13.96 | 36.86 |
| CDY41384 | Canola | nucleus | 15.77 | 32.32 |
| CDX70245 | Canola | nucleus | 20.94 | 28.72 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.27 | 26.29 |
| KRH35991 | Soybean | nucleus | 23.66 | 25.21 |
| KRG90770 | Soybean | nucleus | 23.59 | 24.41 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 16.55 | 24.38 |
| Bra009470.1-P | Field mustard | nucleus | 23.4 | 23.46 |
| Solyc11g008150.1.1 | Tomato | nucleus | 22.5 | 23.06 |
| AT5G04290.1 | Thale cress | nucleus | 22.04 | 22.84 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 15.13 | 22.54 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom_sf | PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 |
| SMART:SM00739 | InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS1A01G324800 | EnsemblPlants:TraesCS1A01G324800.1 | TIGR:cd06081 | TIGR:cd06084 |
| TIGR:cd09888 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:515542951..515554926
Molecular Weight (calculated)
164741.0 Da
IEP (calculated)
5.029
GRAVY (calculated)
-1.036
Length
1547 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVKGKGKQI ATDDPGSSSG SKRRGAGAGR GGAGPSSSSA KRRRGRSGVL QFVDDAAGVD DEYEEDEEEE EEEEEAEELQ DDLDDGFFTA GRTKGVRVER
0101: SHPLPFLGNV KEEELSGDEL EQFINDRYSN RVRYAGYGGS TEQYDDDEST MDGVKDPIIW RVKCMVGRER QMAFCFMQKF LHLQKFGTKV PIISAFSLDH
0201: VRGSVFVEAE KACDVTEACK GFCDVYVNRT STVPVAEVRS LLSTRAKPFE VSPGTWVRMK SGNYKGDLAQ VVSADDGRKK VLIKLIPRVD LHAISKKFGG
0301: AIPLKGAAVP APRLISSQEL EFFGPHIESK RDRQTGDVFE VLDGLMFKDG FLYKRVALSS LIYWGIQPTD TEILKFSSSP SIKSSADDMD WVSGIYGHNK
0401: KRNVPREPDM KKSASSKDKS SKASNLKGST STENCDDDDD DAQFNLHDLV TFGRKDFGVI IAVEKDGFKI LKGGPEGSAV TVRKQDIKKG IVDKMFTAVD
0501: HQNKSISMND TVKVLEGPVQ GKQGVVKHLY MGILFIYDES ESENSGFFCA QCGSCENVKK RRDVTNSDNP MFSESAFISS EQNEQRNNER PYRAPREQLF
0601: QVGEVLRFRR GPLKGYLCRV VRIFRNDVTV KLDSLLKIVT VQAEFLSVPT KRGDNSSSAP SGNFGTQDTP FTEAAKTSWD NGFASLGSDS WQPFSSSALP
0701: AQNADGETEA DPWSKKPTSS ADGDSDPWGN KTTSAAVDIW NNSTAQKESS TDNAWGKEAG GGGFDAGGSS WGGGAVNKDS EKSGNWGEAC KQVDTATGGD
0801: TDPWGSKVKE VVMKEADSWE KSSWSPEKKL EGDDQGWGQP FGKSNQDQEK GTVPKDADKG GSWDTTVAIC VGSDDNDAWA KSATLPVAQD DAWGKSKESG
0901: QNSGSGGWDT VAVGQGQDEA WGNPKDSGAK SEETNNGSGN WNKAGSSDQV GGSDWGKPKI SGGAGSSSWN KGEAAEGDNQ NSTWSRPAGN FEGGRGFGRG
1001: RGRGRGRESW DSGDRNDQES WKGSWRNDSS AKPSWGSDTQ VGNEGGDSGG YRGRGRGRGQ YGGRGGGRDN GWRNGDRGSS EFGKERSSSD TPNWGNSQPW
1101: SANEGTKPCD ENQTPAWNSS EDKKLSGGEQ GDPWASKVTA KGQEQQTDAW SSKAAGAENN DCWNTKAKES SCNTGAKWED AASGEKQQDD PWSNKISSTT
1201: KGKEQETDPW ASKVSSTAAE EKADPWSTKG GNGNDGGWNN AGSSSWGKPS SSSGDQEPAW NEPKYGDDNA GYGRGGFGRG NRGRGRGRFG DSGSSWNGGG
1301: NTNDGSGGGR SEDQWNSRDS DGGRGRGRGR FGRGDRYQGN NFGSGDGDGG SWGSGRGNRG RGGGYRNNGN DNNEGRASSQ DRGGGWSHSS AWNADKKGSA
1401: EDDQSFSKGK SSWGSDNNGS WGAPKPSGGD DQAGKKDGNN TWSQNKPFSG DGSSILGQWA PAGGATAGTA GSAGGGGSWG KSNEDSWNSS KGTGGSEGGL
1501: KKEGSWDKAE GSGSQGGGGG SSWDKVASGG WDSNKGGDAG NGGGSGW
0101: SHPLPFLGNV KEEELSGDEL EQFINDRYSN RVRYAGYGGS TEQYDDDEST MDGVKDPIIW RVKCMVGRER QMAFCFMQKF LHLQKFGTKV PIISAFSLDH
0201: VRGSVFVEAE KACDVTEACK GFCDVYVNRT STVPVAEVRS LLSTRAKPFE VSPGTWVRMK SGNYKGDLAQ VVSADDGRKK VLIKLIPRVD LHAISKKFGG
0301: AIPLKGAAVP APRLISSQEL EFFGPHIESK RDRQTGDVFE VLDGLMFKDG FLYKRVALSS LIYWGIQPTD TEILKFSSSP SIKSSADDMD WVSGIYGHNK
0401: KRNVPREPDM KKSASSKDKS SKASNLKGST STENCDDDDD DAQFNLHDLV TFGRKDFGVI IAVEKDGFKI LKGGPEGSAV TVRKQDIKKG IVDKMFTAVD
0501: HQNKSISMND TVKVLEGPVQ GKQGVVKHLY MGILFIYDES ESENSGFFCA QCGSCENVKK RRDVTNSDNP MFSESAFISS EQNEQRNNER PYRAPREQLF
0601: QVGEVLRFRR GPLKGYLCRV VRIFRNDVTV KLDSLLKIVT VQAEFLSVPT KRGDNSSSAP SGNFGTQDTP FTEAAKTSWD NGFASLGSDS WQPFSSSALP
0701: AQNADGETEA DPWSKKPTSS ADGDSDPWGN KTTSAAVDIW NNSTAQKESS TDNAWGKEAG GGGFDAGGSS WGGGAVNKDS EKSGNWGEAC KQVDTATGGD
0801: TDPWGSKVKE VVMKEADSWE KSSWSPEKKL EGDDQGWGQP FGKSNQDQEK GTVPKDADKG GSWDTTVAIC VGSDDNDAWA KSATLPVAQD DAWGKSKESG
0901: QNSGSGGWDT VAVGQGQDEA WGNPKDSGAK SEETNNGSGN WNKAGSSDQV GGSDWGKPKI SGGAGSSSWN KGEAAEGDNQ NSTWSRPAGN FEGGRGFGRG
1001: RGRGRGRESW DSGDRNDQES WKGSWRNDSS AKPSWGSDTQ VGNEGGDSGG YRGRGRGRGQ YGGRGGGRDN GWRNGDRGSS EFGKERSSSD TPNWGNSQPW
1101: SANEGTKPCD ENQTPAWNSS EDKKLSGGEQ GDPWASKVTA KGQEQQTDAW SSKAAGAENN DCWNTKAKES SCNTGAKWED AASGEKQQDD PWSNKISSTT
1201: KGKEQETDPW ASKVSSTAAE EKADPWSTKG GNGNDGGWNN AGSSSWGKPS SSSGDQEPAW NEPKYGDDNA GYGRGGFGRG NRGRGRGRFG DSGSSWNGGG
1301: NTNDGSGGGR SEDQWNSRDS DGGRGRGRGR FGRGDRYQGN NFGSGDGDGG SWGSGRGNRG RGGGYRNNGN DNNEGRASSQ DRGGGWSHSS AWNADKKGSA
1401: EDDQSFSKGK SSWGSDNNGS WGAPKPSGGD DQAGKKDGNN TWSQNKPFSG DGSSILGQWA PAGGATAGTA GSAGGGGSWG KSNEDSWNSS KGTGGSEGGL
1501: KKEGSWDKAE GSGSQGGGGG SSWDKVASGG WDSNKGGDAG NGGGSGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.