Factsheet for TraesCS7D01G458800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070806	Potato	nucleus	40.34	64.38
CDY72062	Canola	plastid	38.2	59.93
PGSC0003DMT400039204	Potato	cytosol	17.17	53.33
CDX92417	Canola	nucleus	59.87	43.32
TraesCS7B01G373400.1	Wheat	nucleus	68.45	40.59
Os01t0275200-00	Rice	golgi, peroxisome, plastid	37.77	37.69
TraesCS7D01G552900.1	Wheat	mitochondrion	34.12	34.95
EES00570	Sorghum	nucleus	64.81	33.63
TraesCS7D01G553200.1	Wheat	nucleus, plastid	34.12	33.19
KRH73469	Soybean	nucleus	63.73	32.78
GSMUA_Achr9P05150_001	Banana	nucleus	64.16	32.68
KRH14678	Soybean	nucleus	63.52	32.67
TraesCS4D01G024300.1	Wheat	cytosol	38.41	32.55
CDY56413	Canola	nucleus	63.52	32.07
VIT_08s0040g00070.t01	Wine grape	nucleus	63.09	32.03
Solyc01g096750.1.1	Tomato	nucleus	60.52	32.01
CDX77061	Canola	nucleus	63.3	32.0
Bra034318.1-P	Field mustard	nucleus	63.3	32.0
CDY48192	Canola	nucleus	63.3	32.0
CDY04475	Canola	nucleus	63.3	31.96
Solyc06g073540.2.1	Tomato	nucleus	62.45	31.87
AT2G27040.1	Thale cress	nucleus	63.09	31.82
VIT_06s0009g01200.t01	Wine grape	nucleus	62.23	31.76
PGSC0003DMT400069459	Potato	nucleus	62.23	31.76
Solyc01g008960.2.1	Tomato	nucleus	61.8	31.68
PGSC0003DMT400058471	Potato	nucleus	61.59	31.57
TraesCS1D01G453600.1	Wheat	nucleus	62.45	31.56
CDY16587	Canola	nucleus	59.01	31.18
AT5G21150.1	Thale cress	nucleus	59.87	31.14
Bra020152.1-P	Field mustard	nucleus	60.52	31.13
CDY09103	Canola	nucleus	60.52	31.13
Solyc06g073530.1.1	Tomato	nucleus	59.01	30.42
TraesCS5D01G169500.1	Wheat	cytosol	57.51	30.39
CDX92406	Canola	nucleus	58.8	30.31
Bra002361.1-P	Field mustard	nucleus	59.23	30.3
TraesCS3D01G191600.5	Wheat	nucleus	64.81	30.14
CDY59516	Canola	nucleus	58.58	30.13
CDX92405	Canola	nucleus	59.01	30.05
VIT_13s0175g00140.t01	Wine grape	nucleus	56.87	29.94
TraesCS7D01G520400.1	Wheat	nucleus	58.37	29.92
KRG89867	Soybean	nucleus	60.3	29.67
AT5G21030.2	Thale cress	cytosol	54.29	29.63
CDY62055	Canola	nucleus	36.48	29.51
Bra002360.1-P	Field mustard	nucleus	58.37	29.25
KRH56276	Soybean	cytosol	47.85	26.84
CDY16595	Canola	nucleus	50.0	25.33
HORVU7Hr1G107770.1	Barley	nucleus	32.4	25.25
Solyc03g111760.2.1	Tomato	mitochondrion	46.78	23.8
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.89	22.01
TraesCS5D01G454600.1	Wheat	cytosol	34.33	21.59
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	36.7	20.36
TraesCS4D01G024100.1	Wheat	plastid	36.91	20.07
TraesCS7D01G351700.1	Wheat	cytosol	40.34	19.75
TraesCS1D01G151300.3	Wheat	plastid	35.19	19.32
TraesCS6D01G166300.1	Wheat	plastid	37.55	18.4
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	39.27	17.38
TraesCS7D01G553000.1	Wheat	cytosol	37.98	17.17
TraesCS2D01G400200.1	Wheat	nucleus	40.13	17.02
TraesCS6D01G403900.1	Wheat	plastid	38.41	16.97
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	39.91	16.71
TraesCS2D01G176500.1	Wheat	golgi, unclear	36.05	16.2
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	40.13	15.45
Bra002349.1-P	Field mustard	nucleus	56.22	15.4
TraesCS2D01G417000.1	Wheat	nucleus	32.62	14.5
TraesCS2D01G412100.1	Wheat	plastid	32.19	13.43
TraesCS2D01G416500.1	Wheat	nucleus	29.83	13.15
TraesCS5D01G192700.2	Wheat	nucleus	16.95	8.38
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS7D01G458800.1	EnsemblPlantsGene:TraesCS7D01G458800	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:ArgoL2	InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	PANTHER:PTHR22891	PANTHER:PTHR22891:SF20	PFAM:PF02171	PFAM:PF16488	PFscan:PS50822
SMART:SM00950	SUPFAM:SSF53098	TIGR:cd04657	MapMan:12.5.1.13	:	:

Description

No Description!

Coordinates

chr7D:-:576335946..576338803

Molecular Weight (calculated)

52574.3 Da

IEP (calculated)

7.932

GRAVY (calculated)

-0.274

Length

466 amino acids

Sequence
(BLAST)

001: MLRECGISID PEFTQVEGRV LQAPQLNSAD GRELHTPNGR WNFNNDRFIQ PIKVKMWGVV NLSARCNVED LVRRLIQSGA KKGTEMAECG VVIEERHQMR
101: REPPTKRVEA MFQQIKAKLT RKPDFLFLLC VLPEKNSDIY GPWKRECLVE HGIFTQCLVP PPNIKDQYLT NVLLKINAKL GGLNSLLKKE TTRAIPHVSR
201: VPTIIFGMDV SHGSPGRNVP SVAAVVSSLK WPIMSKYRAS VCTQSPRLEM IDTLFKPVGD DDHGLIKDSL VDFLRNNNGQ RPEQIIIFRD GVSESQFNQA
301: LNEELAQIME ACKHFNGNWF PKFTLIVAQK NHHTRFFLPD QVNNVPPGTV VDRGICHPSN YDFYMCAHAG MIGTTRPTHY HVLHDEIGFS ADELEELVHS
401: LSYAYQRSTT AISVVAPIFY AHLAAGQVAK FTRLDDMSET SSQAEAAPVP ELPRLHRNIA SSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.