Factsheet for Bra002349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92417	Canola	nucleus	35.57	93.94
Bra002361.1-P	Field mustard	nucleus	39.8	74.31
Bra020152.1-P	Field mustard	nucleus	37.15	69.76
AT5G21030.2	Thale cress	cytosol	34.74	69.2
Bra002360.1-P	Field mustard	nucleus	37.15	67.96
Bra034318.1-P	Field mustard	nucleus	31.8	58.68
Os01t0275600-01	Rice	nucleus	30.98	58.3
GSMUA_Achr9P05150_001	Banana	nucleus	31.16	57.92
Zm00001d040429_P012	Maize	nucleus	30.57	57.71
Zm00001d008249_P012	Maize	nucleus	30.39	57.44
Os04t0151800-02	Rice	nucleus	30.75	57.41
Bra022057.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	7.29	57.41
TraesCS3A01G188400.1	Wheat	nucleus	30.63	56.88
HORVU3Hr1G038830.1	Barley	nucleus	30.81	56.83
OQU86696	Sorghum	nucleus	30.04	56.78
TraesCS7D01G458800.1	Wheat	nucleus	15.4	56.22
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	30.63	55.19
EES18816	Sorghum	nucleus	29.16	54.57
TraesCS7A01G533100.1	Wheat	cytosol	28.69	54.16
TraesCS1D01G453600.1	Wheat	nucleus	29.34	54.12
PGSC0003DMT400039204	Potato	cytosol	4.76	54.0
TraesCS1A01G445500.1	Wheat	golgi, unclear	29.34	53.95
TraesCS1B01G480100.1	Wheat	nucleus	29.39	53.94
TraesCS7D01G520400.1	Wheat	nucleus	28.75	53.8
Zm00001d039214_P025	Maize	nucleus	29.1	53.57
Bra022918.1-P	Field mustard	nucleus	26.87	52.71
TraesCS7B01G450300.1	Wheat	nucleus	28.45	52.67
TraesCS3D01G191600.5	Wheat	nucleus	30.57	51.9
TraesCS7B01G437900.1	Wheat	cytosol	24.4	51.42
TraesCS7A01G521000.1	Wheat	nucleus	24.4	51.17
EES00570	Sorghum	nucleus	26.87	50.89
TraesCS7B01G450200.2	Wheat	nucleus	27.57	50.65
TraesCS7B01G437700.1	Wheat	nucleus	25.81	49.94
Os01t0275200-00	Rice	golgi, peroxisome, plastid	13.58	49.46
TraesCS7B01G373400.1	Wheat	nucleus	21.28	46.06
Solyc03g111760.2.1	Tomato	mitochondrion	22.75	42.25
TraesCS7D01G458900.1	Wheat	mitochondrion	4.47	41.76
HORVU7Hr1G107770.1	Barley	nucleus	13.93	39.63
Bra033698.1-P	Field mustard	plastid	17.81	31.11
Bra011993.1-P	Field mustard	plastid	16.99	29.92
Bra014136.1-P	Field mustard	nucleus	18.11	28.54
Bra032254.1-P	Field mustard	nucleus	18.28	27.99
Bra003999.1-P	Field mustard	nucleus	14.52	25.18
Bra040815.1-P	Field mustard	cytosol	13.29	22.4
Bra023172.1-P	Field mustard	nucleus	13.58	22.28

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.20.20.210	Gene3D:3.30.420.10
Gene3D:3.40.50.2300	MapMan:4.1.2.2.6.2.1	InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	EnsemblPlantsGene:Bra002349
EnsemblPlants:Bra002349.1	EnsemblPlants:Bra002349.1-P	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740
GO:GO:0031047	GO:GO:0032259	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:IPR038071
UniProt:M4CDR8	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF01717
PFAM:PF02170	PFAM:PF02171	PFAM:PF08267	PFAM:PF08699	PFAM:PF16486	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF51726	SUPFAM:SSF53098
TIGRFAMs:TIGR01371	UniParc:UPI0002544879	InterPro:UROD/MetE-like_sf	SEG:seg	:	:

Description

AT5G20980 (E=0.0) ATMS3 | ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase

Coordinates

chrA10:+:10140703..10151806

Molecular Weight (calculated)

190603.0 Da

IEP (calculated)

8.730

GRAVY (calculated)

-0.303

Length

1701 amino acids

Sequence
(BLAST)

0001: MDPNKSTHLQ MARSGNGSRG QKIDLLTNHF GVNFTTSKSQ HFFQYSVAIT YEDGNPVEAK GIGRKILAKV QETYQTDLGS KHFAYDGDKI LFTVGPLPNN
0101: KLDFSVVLED MSCTRSNTST SDANTKRLRP HNQSKRFNVA ISFAAKISMQ AIQGALQGKE TNDLQDAVRV LDVILRQNAA TKGCLLVRQS FFHNDAKYFS
0201: NNHGGFHLCR GFHSSFRATQ GGLSLNIDVS STLIVSPGPV IDFLVLNQEV RDPSSIDWKK AERTLKNLRV KVDPSNREYK ITGLTRLPCR DQTFLWKKKQ
0301: GNGETKEVEV TVYDYFTKHL EIELRHSGGL PCISVGKPKR PTYFPIEQCH LVSLQRYTKA PTIFQRSKLV KESVQKPQEK MNVLNNAIKD SGYNNDPMLQ
0401: DCGVRIDSDF TQVEGRVLPT PRLKVGNGEE FQPRDGRWNF NNKKLVEPAT VTRWAVVNFS ARCDTKRLIS DLIRCGRMKG INVDPPYKVV FQEDPNYRGA
0501: PANIRVEKMF EQMQSELRKE GIEGKPKFIL CILAEKKNSL VYGPWKRRNL VEEGIVTQCI APTPKINDQY LTNVLLKINA KMMPLVTQVP TFIVGMDVSH
0601: GSPGQSDIPS IAAVVGSREW PLISKYRACV RTQSRKVEMI DNLFKPVTNE KGKQVDEGIF WELLFDFYIS SGKKRPEHII IFRDGVSESQ FNQVLSIELD
0701: QMMQACKFVE ENWEPKFTVI IAQKNHHTKF FRAEGPGNVP PGTIIDSRIC HPRNNDFYLC AHAGLIGTTR PTHYHVLYDE IGFSTDDLQE LVHSLSYVYQ
0801: RSTTAISVGA PVMYAHLADA QMSTAVKFED SSETSSRHGG ITTSEAELVP PMPKLNANVA SSIEGCCGGG DGKTEMILTE EALRKVLGIS KAASSGTRIA
0901: AGSAWEDIRG PDPLPLFFRD VIESWRLWLG AGPDRRPMSS HIVGYPRIGP KRELKFALES FWDGKTGAED LQNVAADLRR SIWKHMAGVG NKYIPSNTFS
1001: YYDQMLDTTA MLGAVPSRYG WESGEVGFDV YFSMARGNDS VPAMEMTKWF DTNYHYIVPE LGPHVKFSYA SHKAVEEFKE AKALGIDTVP VLIGPMTYLL
1101: LSKPAKDVDK SFCLLSLIDK ILPVYKEVLT DLKSAGARWI QFDEPILVMD LDTNQLQAFS DAYSHMESSL AGLNVLIATY FADVPAEAYK ALTSLKCVTG
1201: FGFDLVRGLE TLDLIKVDFP RGKLLFAGVV DGRNIWANDL SASLKTLQTL EDIVGKEKVV VSTSCSLLHT AVDLVNEIKL DKELKSWLAF AAQKVVEVNA
1301: LARSFSGVKD EALFASNSMR QASRRSSPRV TNATIQHNVA AVIKSDHRRS TKVSARLQAQ QKKLNLPPLP TTTIGSFPQT PDLRRIRKEF KARKISEIDY
1401: VQAIKVEFEK VVKLQEELGI DVLVHGEAER NDMVEFFGEQ LSGFAFTSNG WVQSYGSRCV KPPIIYGDVS RPKAMTVFWS SMAQKMTKRP MKGMLTGPVT
1501: ILNWSFVRND QPRYETCFQI ALAIKDEVKD LEKAGITVIQ IDEAALREGL PLRRSEQELY LDWAVHAFRI TNCDVRDTTQ IHTHMCYSNF NDIINSIINM
1601: DADVITIENS RSDEKLLSVF HEGVKYGAGI GPGVYDIHSP RIPSAEEIAE RINKMLAVLD SKVLWVNPDC GLKTRKYSEV KSALSNMVAA AKLIRSQLNK
1701: S

Best Arabidopsis Sequence Match ( AT5G20980.1 )
(BLAST)

001: MGQLALQRLQ PLASLPRRPP SLPPPSSATP SLPCATASRR PRFYVARAMS SHIVGYPRIG PKRELKFALE SFWDGKTNVD DLQNVAANLR KSIWKHMAHA
101: GIKYIPSNTF SYYDQMLDTT AMLGAVPSRY GWESGEIGFD VYFSMARGNA SAHAMEMTKW FDTNYHYIVP ELGPDVNFSY ASHKAVVEFK EAKALGIDTV
201: PVLIGPMTYL LLSKPAKGVE KSFCLLSLID KILPVYKEVL ADLKSAGARW IQFDEPILVM DLDTSQLQAF SDAYSHMESS LAGLNVLIAT YFADVPAEAY
301: KTLMSLKCVT GFGFDLVRGL ETLDLIKMNF PRGKLLFAGV VDGRNIWAND LSASLKTLQT LEDIVGKEKV VVSTSCSLLH TAVDLVNEMK LDKELKSWLA
401: FAAQKVVEVN ALAKSFSGAK DEALFSSNSM RQASRRSSPR VTNAAVQQDV DAVKKSDHHR STEVSVRLQA QQKKLNLPAL PTTTIGSFPQ TTDLRRIRRE
501: FKAKKISEVD YVQTIKEEYE KVIKLQEELG IDVLVHGEAE RNDMVEFFGE QLSGFAFTSN GWVQSYGSRC VKPPIIYGDI TRPKAMTVFW SSMAQKMTQR
601: PMKGMLTGPV TILNWSFVRN DQPRHETCFQ IALAIKDEVE DLEKAGVTVI QIDEAALREG LPLRKSEQKF YLDWAVHAFR ITNSGVQDST QIHTHMCYSN
701: FNDIIHSIID MDADVITIEN SRSDEKLLSV FHEGVKYGAG IGPGVYDIHS PRIPSTEEIA ERINKMLAVL DSKVLWVNPD CGLKTRNYSE VKSALSNMVA
801: AAKLIRSQLN KS

Arabidopsis Description

MS35-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WNZ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.