Factsheet for TraesCS7B01G450200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G533100.1	Wheat	cytosol	87.8	90.23
TraesCS7B01G450300.1	Wheat	nucleus	76.57	77.15
TraesCS1B01G480100.1	Wheat	nucleus	74.73	74.65
Os04t0151800-02	Rice	nucleus	72.57	73.77
EES18816	Sorghum	nucleus	69.76	71.07
Zm00001d039214_P025	Maize	nucleus	68.9	69.05
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	65.98	64.72
PGSC0003DMT400070806	Potato	nucleus	20.09	63.7
GSMUA_Achr9P05150_001	Banana	nucleus	62.09	62.84
VIT_06s0009g01200.t01	Wine grape	nucleus	61.02	61.88
PGSC0003DMT400069459	Potato	nucleus	61.02	61.88
Solyc06g073540.2.1	Tomato	nucleus	60.48	61.34
KRH73469	Soybean	nucleus	59.83	61.15
KRH14678	Soybean	nucleus	59.83	61.15
Solyc01g008960.2.1	Tomato	nucleus	59.94	61.06
PGSC0003DMT400058471	Potato	nucleus	59.61	60.73
Solyc01g096750.1.1	Tomato	nucleus	56.7	59.59
KRG89867	Soybean	nucleus	60.69	59.35
CDY72062	Canola	plastid	18.9	58.92
Solyc06g073530.1.1	Tomato	nucleus	57.45	58.85
VIT_08s0040g00070.t01	Wine grape	nucleus	57.99	58.5
CDY48192	Canola	nucleus	57.56	57.81
Bra034318.1-P	Field mustard	nucleus	57.45	57.7
AT2G27040.1	Thale cress	nucleus	57.56	57.68
CDY56413	Canola	nucleus	57.45	57.64
CDX77061	Canola	nucleus	57.24	57.48
CDY04475	Canola	nucleus	57.24	57.42
AT5G21150.1	Thale cress	nucleus	55.18	57.03
CDX92417	Canola	nucleus	38.98	56.06
Bra020152.1-P	Field mustard	nucleus	54.64	55.85
CDY09103	Canola	nucleus	54.43	55.63
VIT_13s0175g00140.t01	Wine grape	nucleus	52.92	55.37
Bra002361.1-P	Field mustard	nucleus	54.43	55.32
CDX92406	Canola	nucleus	53.46	54.76
AT5G21030.2	Thale cress	cytosol	50.43	54.68
CDX92405	Canola	nucleus	54.0	54.64
CDY16587	Canola	nucleus	51.84	54.42
CDY59516	Canola	nucleus	52.81	53.97
TraesCS7B01G437700.1	Wheat	nucleus	51.19	53.92
TraesCS7B01G437900.1	Wheat	cytosol	46.87	53.78
TraesCS5B01G162300.1	Wheat	mitochondrion	51.4	53.01
Bra002360.1-P	Field mustard	nucleus	52.92	52.69
PGSC0003DMT400039204	Potato	cytosol	8.21	50.67
TraesCS7B01G373400.1	Wheat	nucleus	41.9	49.36
CDY16595	Canola	nucleus	48.6	48.91
KRH56276	Soybean	cytosol	42.22	47.05
Solyc03g111760.2.1	Tomato	mitochondrion	44.06	44.54
CDY62055	Canola	nucleus	24.73	39.76
TraesCS3B01G027100.1	Wheat	cytosol	6.05	36.6
TraesCS4B01G026600.1	Wheat	cytosol	18.25	34.85
TraesCS5B01G468000.1	Wheat	plastid	30.35	32.19
TraesCS3B01G135800.1	Wheat	cytosol	28.83	31.75
TraesCS7B01G256500.1	Wheat	cytosol	32.4	31.38
TraesCS6B01G206700.1	Wheat	plastid	31.53	30.8
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	27.97	30.51
TraesCS5B01G454200.1	Wheat	cytosol	21.81	29.93
TraesCS6B01G466700.1	Wheat	nucleus	32.61	29.81
TraesCS3B01G287600.1	Wheat	nucleus	28.94	29.58
TraesCS7B01G482100.1	Wheat	nucleus	32.94	29.55
TraesCS4B01G024000.1	Wheat	nucleus	32.29	29.2
TraesCS6B01G270900.1	Wheat	nucleus	32.83	28.02
TraesCS2B01G421000.2	Wheat	nucleus	33.26	27.95
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	29.59	27.82
Bra002349.1-P	Field mustard	nucleus	50.65	27.57
TraesCS5B01G452500.1	Wheat	nucleus	27.11	27.52
TraesCS5B01G451400.2	Wheat	plastid	31.43	27.45
TraesCS2B01G195200.2	Wheat	nucleus	29.7	27.28
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	20.41	23.54
TraesCS2B01G434000.1	Wheat	nucleus	26.24	23.14
TraesCS2B01G439000.2	Wheat	nucleus, unclear	25.7	22.75
TraesCS5B01G458100.1	Wheat	cytosol	23.11	22.53
TraesCS2B01G438200.1	Wheat	nucleus	22.25	19.27

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7B01G450200	EnsemblPlants:TraesCS7B01G450200.2
TIGR:cd02846	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:712094907..712100552

Molecular Weight (calculated)

103924.0 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.415

Length

926 amino acids

Sequence
(BLAST)

001: MNPSDGGSEE LPPPPALPPD MVPIKAEEDV AEELPPNKPA KTKRLPKARP GLGKRGQTIQ LLANHYKVSM RSSNDFFHHY HVNLKYGDDQ PVVGKEIVRK
101: VLDKLQHMYR SELANNEFAY DGEKSLFTIE PLYNEFTVVL EDIGRGKCSG GNSGSSPGGS DTKRVKRSYQ TKIFKVELCF VAKIPTAAIT QALRGQESEN
201: SLEALRVLHI ILRQHSAKQG CLLLRQSFFH NNPRNFLDLK GGVVGCRGFH SSFRGTQSGL SLNIDVSTTM LVKPGPVIDF LLANQMVDHP NRIDWSKAKR
301: ALKNLRIKTT LSNSEFKIFG LSEKKSNEQT FPLRRRDGDN GDTNTVEIKV YEYFVHNRGI GLRYSDLPCI NAGRRNRPTY FPLELCELVP LQRYTKDLSI
401: LQRSSLVEKS RQKPHERMSI LNDALKRSNY ESDPMLKACD ISIARHFTQI EGRVLPAPKL KAGNGEEFFP RNGRWNLSKK RLIQTCSVNK WAVVNFSAEC
501: DVHGLVRDLI RIATEMGIKI EYPYCDVIEE SPSARRAPAS RRVDEMFAKI NSNPPGDPKF LLCLLPDRKN CEIYGPWKRK CLAECGIFTQ CLAPPRKVND
601: QYLINVLLKI NAKLGGLNTL LQCELSPAPA VLPIVGKLPT IILGMNVSHG QPGQSDRPST AAVVNSREWP LISKYRATVH TQSPKLEMMS SLFKPWGKDD
701: GLIRESLIDF YTSSGNRKPE NYYFQVVNSR QWPLISKYRA TVHTQSPKLE MMSSLFEPRG KKDDGLIRDG VSESQFTQVI NIELEQIIEA CKFRTESPNN
801: VPPGTVVDKE VCHPKNFDFY MCAHAGMIGT SRPTHYHVLH DEIGFSADEL QEFVHSLSYV YQRSTTAISV VAPIMYAHLA AAQVGAFVKF EDMSAASSSQ
901: GGGHTSAGSI PVPELHKNVR TSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.