Factsheet for VIT_08s0040g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g01200.t01	Wine grape	nucleus	75.38	75.79
Os01t0275600-01	Rice	nucleus	69.39	70.46
GSMUA_Achr9P05150_001	Banana	nucleus	69.61	69.84
Zm00001d008249_P012	Maize	nucleus	67.21	68.56
Os04t0151800-02	Rice	nucleus	67.86	68.39
Zm00001d040429_P012	Maize	nucleus	67.1	68.37
OQU86696	Sorghum	nucleus	66.67	68.0
TraesCS3A01G188400.1	Wheat	nucleus	67.21	67.36
HORVU3Hr1G038830.1	Barley	nucleus	66.56	66.27
EES18816	Sorghum	nucleus	65.47	66.12
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	67.1	65.25
Zm00001d039214_P025	Maize	nucleus	65.47	65.04
TraesCS1D01G453600.1	Wheat	nucleus	64.81	64.53
TraesCS1A01G445500.1	Wheat	golgi, unclear	64.6	64.11
TraesCS1B01G480100.1	Wheat	nucleus	64.6	63.97
TraesCS7D01G458800.1	Wheat	nucleus	32.03	63.09
VIT_13s0175g00140.t01	Wine grape	nucleus	60.68	62.94
TraesCS7A01G533100.1	Wheat	cytosol	60.57	61.71
TraesCS3D01G191600.5	Wheat	nucleus	66.99	61.38
TraesCS7D01G520400.1	Wheat	nucleus	60.46	61.06
VIT_12s0059g01430.t01	Wine grape	nucleus	61.0	60.87
TraesCS7B01G450300.1	Wheat	nucleus	60.57	60.5
TraesCS7B01G450200.2	Wheat	nucleus	58.5	57.99
EES00570	Sorghum	nucleus	56.32	57.57
TraesCS7A01G521000.1	Wheat	nucleus	50.54	57.21
TraesCS7B01G437900.1	Wheat	cytosol	49.56	56.38
TraesCS7B01G437700.1	Wheat	nucleus	52.83	55.18
Os01t0275200-00	Rice	golgi, peroxisome, plastid	26.91	52.89
TraesCS7B01G373400.1	Wheat	nucleus	44.01	51.4
TraesCS7D01G458900.1	Wheat	mitochondrion	9.91	50.0
HORVU7Hr1G107770.1	Barley	nucleus	29.63	45.48
VIT_11s0016g04620.t01	Wine grape	cytosol	34.2	34.7
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	28.1	33.2
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	30.5	32.9
VIT_05s0020g04190.t01	Wine grape	nucleus	30.72	32.12
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	34.64	30.81
VIT_17s0053g00680.t01	Wine grape	nucleus	35.08	29.68
VIT_03s0038g00830.t01	Wine grape	nucleus	28.76	26.37
VIT_01s0113g00500.t01	Wine grape	nucleus	28.32	25.92
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	26.69	25.84
VIT_10s0042g01150.t01	Wine grape	nucleus	27.23	25.54
VIT_10s0042g01200.t01	Wine grape	nucleus	27.56	25.45

Protein Annotations

EntrezGene:100260151	wikigene:100260151	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	ProteinID:CCB57170	ProteinID:CCB57170.1	UniProt:F6HQT9
EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
EntrezGene:LOC100260151	wikigene:LOC100260151	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI00015CA449	ArrayExpress:VIT_08s0040g00070	EnsemblPlantsGene:VIT_08s0040g00070	EnsemblPlants:VIT_08s0040g00070.t01
unigene:Vvi.12685	RefSeq:XP_002279115	RefSeq:XP_002279115.2	RefSeq:XP_010653696.1	RefSeq:XP_010653697.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:10978420..10994078

Molecular Weight (calculated)

102443.0 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.379

Length

918 amino acids

Sequence
(BLAST)

001: MKPSDTTEVT EEVLPPPPSV IPHDGVGIQV KPEHTSESVK KTTKPKRVPM SRRGFGSKGQ KISLLTNHFK VGITNASGHF FHYSVALTYE DGRPVEMKGV
101: GRKIMDKVHE TYDTELSGKD FAYDGEKSLF TVGALPHNKL EFTVVLDSVS SNRNTRNGSP DVNGSPNGGD RKRPRRASQS KTFKVEISFA AKIPMQAIAS
201: ALRGQESENS QEAIRVLDII LRQHAAKQGC LLVRQSFFHD NSRNFTDLGG GVLGCRGFHS SFRATQGGLS LNVDGSTTTI IQPGPLVDFL IANQNARDPF
301: QLDWSKAKRT LKNLRIKVKP SNSEYRIVGL SESPCKEQMF TLKNRGKNGN DDAESIEVTV YDYFVNYRQI ELRYSGDLPC INVGKPKRPT YLPIELCFLV
401: SLQRYTKALT VHQRSTLVER SRQKPQEKMT ILTDVMKSNN YEADSLLRSC GISISTQFTQ VEGRVLSAPR LKAGNGEDLI ARNGRWSFNN KKLAEPSKIK
501: NWAAVNFSAR CDTKGLCRDI ARFGETKGIF IDPPIDVFEE NPQFRRAPPM VRVEKMFEQM KPQLPDGPPH FIVCLLPDRK NSDIYGPWKR KCLAEFGIFN
601: QCLAPTRVND QYIMNVLLKI NAKLGGLNSL LAIEPSRNIP LVSKVPTIIF GMDVSHGSPG QSDIPSVAAV VSSRCWPLIS RYRASVRTQS PKVEMIDSLF
701: KPVSDDKDLG IVRELLLDFY VSSGQTKPTQ IIIFRDGVSE SQFNQVLNIE LDQIIEACKF LDEKWTPKFT IIIAQKNHHT KFFQAGSQDN VPPGTVIDSK
801: VCHPTHNDFY MCAHAGMIGT TRPTHYHVLL DEIGFSADDM QELIHSLSYV YQRSTTAISI VAPVRYAHLA ATQVSQFMKF DDSSETSSSH GSLTSVGGPP
901: VPELPRLHEK VCSSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.