Factsheet for VIT_10s0042g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	61.97	64.98
VIT_10s0042g01150.t01	Wine grape	nucleus	62.98	63.94
KRH36727	Soybean	nucleus	25.45	55.85
PGSC0003DMT400054667	Potato	cytosol	40.85	55.62
KRH11732	Soybean	nucleus	54.63	52.36
KRG89432	Soybean	nucleus	50.5	51.97
CDY70429	Canola	plastid	44.87	50.28
PGSC0003DMT400054669	Potato	cytosol	51.71	48.91
Solyc02g069260.2.1	Tomato	nucleus	51.01	48.66
Solyc02g069270.2.1	Tomato	cytosol	47.69	48.52
CDY25885	Canola	cytosol	47.38	46.63
Bra040815.1-P	Field mustard	cytosol	47.28	46.58
AT1G31280.1	Thale cress	nucleus	47.38	46.45
CDY55876	Canola	cytosol	47.28	45.41
CDY02373	Canola	nucleus	46.68	45.36
Bra023172.1-P	Field mustard	nucleus	47.18	45.23
Zm00001d002316_P003	Maize	plastid	38.83	45.09
Zm00001d026300_P001	Maize	nucleus	39.24	44.27
Solyc02g069280.2.1	Tomato	nucleus	43.76	43.54
PGSC0003DMT400054661	Potato	nucleus	41.95	42.55
TraesCS2A01G419800.2	Wheat	nucleus	28.47	40.14
Os04t0615700-01	Rice	nucleus, plasma membrane	39.84	38.3
AT1G31290.1	Thale cress	nucleus	45.98	38.27
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	30.68	37.98
KXG27113	Sorghum	nucleus	40.54	36.9
TraesCS2A01G419900.1	Wheat	nucleus	38.83	36.8
TraesCS2B01G439000.2	Wheat	nucleus, unclear	38.63	36.71
HORVU2Hr1G098650.1	Barley	nucleus	38.53	36.58
TraesCS2D01G417000.1	Wheat	nucleus	38.53	36.55
VIT_03s0038g00830.t01	Wine grape	nucleus	34.81	34.57
VIT_01s0113g00500.t01	Wine grape	nucleus	34.81	34.5
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	25.45	32.56
HORVU2Hr1G098620.2	Barley	nucleus	33.2	32.38
VIT_11s0016g04620.t01	Wine grape	cytosol	29.48	32.38
TraesCS2B01G438200.1	Wheat	nucleus	33.9	31.52
TraesCS2D01G416500.1	Wheat	nucleus	33.4	31.41
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	26.86	31.37
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	32.49	31.3
VIT_05s0020g04190.t01	Wine grape	nucleus	27.46	31.09
TraesCS2A01G419500.1	Wheat	nucleus	32.9	30.7
VIT_12s0059g01430.t01	Wine grape	nucleus	27.67	29.89
VIT_06s0009g01200.t01	Wine grape	nucleus	26.86	29.24
VIT_17s0053g00680.t01	Wine grape	nucleus	31.89	29.22
VIT_13s0175g00140.t01	Wine grape	nucleus	25.45	28.59
VIT_08s0040g00070.t01	Wine grape	nucleus	25.45	27.56
Os04t0615800-01	Rice	nucleus	0.3	0.57

Protein Annotations

MapMan:12.5.1.15.2	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	EMBL:AM425792	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_N	ProteinID:CAN66699	ProteinID:CAN66699.1	ProteinID:CBI29068	ProteinID:CBI29068.3
ncoils:Coil	UniProt:D7TEZ5	EMBL:FN595766	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF4	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	TIGR:TC66057	UniParc:UPI0001BE316C	ArrayExpress:VIT_10s0042g01200
EnsemblPlantsGene:VIT_10s0042g01200	EnsemblPlants:VIT_10s0042g01200.t01	RefSeq:XP_002274220	RefSeq:XP_002274220.2	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:15190604..15195208

Molecular Weight (calculated)

112514.0 Da

IEP (calculated)

9.828

GRAVY (calculated)

-0.416

Length

994 amino acids

Sequence
(BLAST)

001: MGHDRDYYHY GGSSDRYGGN GGGGWRSSGL SPRNSPAWRP LPPSPPRRPL PLPSPPRRPL PPLSPPRRHP PPLSPPRRHL PPSSPPRRPL PPPSPPRRPL
101: PSMPAFVESR RSPDTVPEME PSKLLGSLTP TSSLERMDRV LPIRRPDKGG TNAIQSTMVR VNHFPVKFNS EKIILHYDVD IKPEVLPKHG RTLKLSKSNR
201: CMIKEKLFSD DPSRFPLSRT AFDGEKNIFS VVELPTGKFK VEFSESEDMK ICSYIFTIKL VNQLELRKLK DYLSGKLFSI PREILQGMDV VMKENPARHM
301: ISVGRSFYPT LFSLDDDLGH GIVASRGFLH SLKPTAQGLT LCLDYSVLAF RKPIPVIDFL EEHVNGFKLN DLRRVRKEVE VALKGLKVRV IHRLCKQKYT
401: ISGLSGEDTR YLSFIAEDLE GKSPAKKVGI IDYFREKYGK DIKYKDIPCL DLGKNNRKNY VPMEFCILTE GQRFLKENLD RNGAQKLKNL SLVAPKVREN
501: NICEMVRSKT GPCGGDMINN FGIEVNMRMT TVAGRVIMAP ELKLGGAHNG RMSKITVDRN RCHWNFVGKS VVEGKHIDRW AVLDFSAYEG FNRLNPDHFI
601: PKFIRRCASL GIRMDEPLLY QSSRMNAFSN VAMLRELLLG VAGRAHDSTK NQLQILVCVM ARKDPGYNYL KWFCETNIGI VTQCCLSSPA NKANDQYLAN
701: LALKMNAKLG GSNVELIDRL PHFENEGYVM FVGADVNHPG AWNSASPSIA AVVATVNWPA VNRYAARVRP QLHRTEKILN FGDMCLELIE TYAQVNRAKP
801: DKIVVFRDGV SEGQFDMVLN EELVDLKGAI QRGNYNPTIT LIITQKRHQT RLFPESKRER GQDRSFNENV SPGTVVDTTV VHPFEFDFYL CSHYGGIGTS
901: KPTHYHVLYD EHRFSSDQLQ KLIYNLCFTF VRCTKPVSLV PPVYYADLAA YRGRLYHDAL ELERPASASA ASAASFDERF YRLHGDLENT MFFV

Best Arabidopsis Sequence Match ( AT1G31280.1 )
(BLAST)

0001: MERGGYRGGR GDGRGRGGRG YGGGGGGGEQ GRDRGYGGGE QGRGRGSERG GGNRGQGRGE QQDFRSQSQR GPPPGHGGRG TTQFQQPRPQ VAPQPSQAPA
0101: SYAGSVGGVA GRGAWGRKPQ VPSDSASPST STTVVSEPVR VAEVMNLKPS VQVATSDRKE PMKRPDRGGV VAVRRVNLYV NHYKVNFNPE SVIRHYDVEI
0201: KGEIPTKKVS RFELAMVRDK VFTDNPDEFP LAMTAYDGQK NIFSAVELPT GSYKVEYPKT EEMRGRSYTF TIKQVNVLKL GDLKEYMTGR SSFNPRDVLQ
0301: GMDVVMKEHP SKCMITVGKS FFTRETEPDE DFRFGVIAAK GYRHTLKPTA QGLSLCLDYS VLAFRKAMSV IEYLKLYFNW SDMRQFRRRD VEEELIGLKV
0401: TVNHRKNKQK LTIVGLSMQN TKDIKFDLID QEGNEPPRKT SIVEYFRIKY GRHIVHKDIP CLDLGKNGRQ NFVPMEFCDL VEGQIYPKDN LDKDSALWLK
0501: KLSLVNPQQR QRNIDKMIKA RNGPSGGEII GNFGLKVDTN MTPVEGRVLK APSLKLAERG RVVREEPNPR QNNQWNLMKK GVTRGSIVKH WAVLDFTASE
0601: RFNKMPNDFV DNLIDRCWRL GMQMEAPIVY KTSRMETLSN GNAIEELLRS VIDEASRKHG GARPTLVLCA MSRKDDGYKT LKWIAETKLG LVTQCFLTGP
0701: ATKGGDQYRA NLALKMNAKV GGSNVELMDT FSFFKKEDEV MFIGADVNHP AARDKMSPSI VAVVGTLNWP EANRYAARVI AQPHRKEEIQ GFGDACLELV
0801: KAHVQATGKR PNKIVIFRDG VSDAQFDMVL NVELLDVKLT FEKNGYNPKI TVIVAQKRHQ TRFFPATNND GSDKGNVPSG TVVDTKVIHP YEYDFYLCSH
0901: HGGIGTSKPT HYYTLWDELG FTSDQVQKLI FEMCFTFTRC TKPVSLVPPV YYADMVAFRG RMYHEASSRE KNFKQPRGAS TSAASLASSL SSLTIEDKAI
1001: FKLHAELENV MFFV

Arabidopsis Description

AGO2Protein argonaute 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.