Factsheet for VIT_05s0020g04190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91384	Soybean	cytosol	88.95	80.18
KRH35431	Soybean	cytosol	88.04	79.36
PGSC0003DMT400077569	Potato	nucleus, plastid	85.54	78.31
Solyc09g082830.2.1	Tomato	nucleus	87.24	78.0
KRH69078	Soybean	cytosol	85.65	77.37
KRH31645	Soybean	nucleus	83.03	76.82
Bra033698.1-P	Field mustard	plastid	83.37	75.15
CDY22332	Canola	plastid	83.37	75.08
AT5G43810.3	Thale cress	nucleus	84.4	75.0
CDX94724	Canola	plastid	83.6	74.82
VIT_11s0016g04620.t01	Wine grape	cytosol	68.0	65.97
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	57.74	65.25
VIT_17s0053g00680.t01	Wine grape	nucleus	73.35	59.35
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.24	47.0
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	45.1	46.53
VIT_12s0059g01430.t01	Wine grape	nucleus	33.49	31.96
VIT_03s0038g00830.t01	Wine grape	nucleus	36.33	31.87
VIT_06s0009g01200.t01	Wine grape	nucleus	32.92	31.65
VIT_01s0113g00500.t01	Wine grape	nucleus	35.54	31.11
VIT_08s0040g00070.t01	Wine grape	nucleus	32.12	30.72
VIT_13s0175g00140.t01	Wine grape	nucleus	30.52	30.28
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	31.78	29.43
VIT_10s0042g01150.t01	Wine grape	nucleus	31.32	28.09
VIT_10s0042g01200.t01	Wine grape	nucleus	31.09	27.46

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ProteinID:CCB50463	ProteinID:CCB50463.1	UniProt:F6HDU2	EMBL:FN595749
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009653
GO:GO:0009934	GO:GO:0009987	GO:GO:0010586	GO:GO:0031047	GO:GO:0035019	GO:GO:0035198
GO:GO:0051607	GO:GO:1902183	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF45	InterPro:Piwi
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690
SUPFAM:SSF53098	UniParc:UPI000210AA1C	ArrayExpress:VIT_05s0020g04190	EnsemblPlantsGene:VIT_05s0020g04190	EnsemblPlants:VIT_05s0020g04190.t01	SEG:seg

Description

No Description!

Coordinates

chr5:-:5849739..5857865

Molecular Weight (calculated)

98791.4 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.474

Length

878 amino acids

Sequence
(BLAST)

001: MPMRQMKESS EQHLVIKTHL QNSMNPVQKP PKTAQNGKGP PSHEPQNAKP HSQTSPSSKN RGRRRGRGGR KSDQSDVFMR PSSRPCTVAD KPVLAHQAGP
101: LVTDIPHGCV ENGGNMCEME MGFPSSSKSL TFAPRPGYGQ LGTKCIVKAN HFFTELPEKD LNQYDVTITP EVSSRTVNRA IMNELVKLYK ESDLGMRLPA
201: YDGRKSLYTA GELPFAWKEF KVKLVDEEDG INGPKREREY KVVIKFVARA SLHHLGQFLA GKRADAPQEA LQILDIVLRE LSTRRYCPVG RSFFSPDIRA
301: PQRLGEGLES WCGFYQSIRP TQMGLSLNID MSSAAFIEAL PVIEFVGQLL GKDVLSRPLS DSDRVKIKKA LRGVKVEVTH RGNVRRKYRV SGLTSQPTRE
401: LVFPVDDNST MKSVVEYFQE MYGFTIQHAH LPCLQVGNQK KANYLPLEAC KIVEGQRYTK RLNERQITAL LKVTCQRPRD QENDILQTVQ HNAYDQDPYA
501: KEFGIKISEK LASVEARILP APWLKYHETG KEKDCLPQVG QWNMMNKKMI NGMTVSRWAC INFSRSVQES VARGFCNELA QMCQVSGMMG GRNTVLLDAI
601: SCRIPLVSDI PTIIFGADVT HPENGEDSSP SIAAVVASQD WPEVTKYAGL VCAQAHRQEL IQDLYKTWHD PVRGTVSGGM IRDLLVSFRK ATGQKPLRII
701: FYRDGVSEGQ FYQVLLYELD AIRKACASLE PNYQPPVTFI VVQKRHHTRL FANNHRDRNS TDRSGNILPG TVVDSKICHP TEFDFYLCSH AGIQGTSRPA
801: HYHVLWDENN FTADGIQSLT NNLCYTYARC TRSVSVVPPA YYAHLAAFRA RFYMEPDMQE NGSNGGGSEN VKRVMFYC

Best Arabidopsis Sequence Match ( AT5G43810.3 )
(BLAST)

001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC

Arabidopsis Description

AGO10Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.