Factsheet for VIT_06s0009g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0131g00430.t01
VIT_13s0019g04950.t01
VIT_13s0067g03120.t01
VIT_14s0006g02120.t01
VIT_19s0093g00140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	VIT_13s0067g03120.t01	AT2G40030.1	19410546
AT2G27040.1	VIT_00s0131g00430.t01	AT5G04290.1	19410546
AT2G27040.1	VIT_13s0019g04950.t01	AT5G04290.1	19410546
AT2G27040.1	VIT_14s0006g02120.t01	AT5G04290.1	19410546
AT2G27040.1	VIT_19s0093g00140.t01	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058471	Potato	nucleus	83.35	83.72
Solyc01g008960.2.1	Tomato	nucleus	83.02	83.39
PGSC0003DMT400069459	Potato	nucleus	82.58	82.58
Solyc06g073540.2.1	Tomato	nucleus	82.37	82.37
KRH73469	Soybean	nucleus	80.61	81.24
KRH14678	Soybean	nucleus	80.61	81.24
KRG89867	Soybean	nucleus	79.19	76.35
Solyc06g073530.1.1	Tomato	nucleus	74.81	75.55
VIT_08s0040g00070.t01	Wine grape	nucleus	75.79	75.38
GSMUA_Achr9P05150_001	Banana	nucleus	74.15	73.99
Os01t0275600-01	Rice	nucleus	72.84	73.56
CDY48192	Canola	nucleus	73.93	73.21
Os04t0151800-02	Rice	nucleus	72.95	73.11
CDX77061	Canola	nucleus	73.82	73.1
Bra034318.1-P	Field mustard	nucleus	73.82	73.1
CDY56413	Canola	nucleus	73.71	72.91
CDY04475	Canola	nucleus	73.71	72.91
AT2G27040.1	Thale cress	nucleus	73.71	72.84
Zm00001d040429_P012	Maize	nucleus	71.63	72.59
Zm00001d008249_P012	Maize	nucleus	71.52	72.56
OQU86696	Sorghum	nucleus	71.41	72.44
TraesCS3A01G188400.1	Wheat	nucleus	71.3	71.07
HORVU3Hr1G038830.1	Barley	nucleus	70.65	69.96
EES18816	Sorghum	nucleus	69.22	69.53
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	71.19	68.86
Zm00001d039214_P025	Maize	nucleus	68.67	67.86
TraesCS1D01G453600.1	Wheat	nucleus	67.8	67.14
TraesCS1B01G480100.1	Wheat	nucleus	68.13	67.1
TraesCS1A01G445500.1	Wheat	golgi, unclear	67.91	67.03
VIT_13s0175g00140.t01	Wine grape	nucleus	63.97	65.99
TraesCS7A01G533100.1	Wheat	cytosol	64.4	65.26
TraesCS3D01G191600.5	Wheat	nucleus	71.41	65.07
TraesCS7D01G520400.1	Wheat	nucleus	64.73	65.02
VIT_12s0059g01430.t01	Wine grape	nucleus	65.28	64.78
TraesCS7B01G450300.1	Wheat	nucleus	64.62	64.2
TraesCS7D01G458800.1	Wheat	nucleus	31.76	62.23
TraesCS7B01G450200.2	Wheat	nucleus	61.88	61.02
TraesCS7A01G521000.1	Wheat	nucleus	52.35	58.94
EES00570	Sorghum	nucleus	57.61	58.57
TraesCS7B01G437900.1	Wheat	cytosol	51.59	58.36
TraesCS7B01G437700.1	Wheat	nucleus	54.76	56.88
Os01t0275200-00	Rice	golgi, peroxisome, plastid	28.48	55.67
TraesCS7B01G373400.1	Wheat	nucleus	45.78	53.18
TraesCS7D01G458900.1	Wheat	mitochondrion	10.51	52.75
CDY62055	Canola	nucleus	30.45	48.26
HORVU7Hr1G107770.1	Barley	nucleus	31.43	47.99
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	32.86	35.25
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	29.46	34.62
VIT_11s0016g04620.t01	Wine grape	cytosol	33.95	34.25
VIT_05s0020g04190.t01	Wine grape	nucleus	31.65	32.92
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	37.02	32.75
VIT_17s0053g00680.t01	Wine grape	nucleus	36.91	31.06
VIT_03s0038g00830.t01	Wine grape	nucleus	29.79	27.17
VIT_01s0113g00500.t01	Wine grape	nucleus	29.57	26.92
VIT_10s0042g01200.t01	Wine grape	nucleus	29.24	26.86
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	27.82	26.79
VIT_10s0042g01150.t01	Wine grape	nucleus	28.15	26.25

Protein Annotations

EntrezGene:100241029	wikigene:100241029	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ProteinID:CBI24382	ProteinID:CBI24382.3
UniProt:D7T1K2	EMBL:FN595504	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EntrezGene:LOC100241029	wikigene:LOC100241029	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0001983954	ArrayExpress:VIT_06s0009g01200
EnsemblPlantsGene:VIT_06s0009g01200	EnsemblPlants:VIT_06s0009g01200.t01	unigene:Vvi.4709	RefSeq:XP_002275928	RefSeq:XP_002275928.1	RefSeq:XP_010651616.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:12830509..12839331

Molecular Weight (calculated)

101861.0 Da

IEP (calculated)

9.199

GRAVY (calculated)

-0.401

Length

913 amino acids

Sequence
(BLAST)

001: MDSGEDGNGA QDALPPPPPV PPNVVPIKAD SVASEPVKKK VARVPIARRG FASKGQKIAL TTNHFKVNVT GADGHFFHYS VSLSYEDGRP VDGKGIGRKV
101: IDRVHETYDS ELGGKDFAYD GEKSLFTVGP LPRNKLEFTV VLEDVSSNRN NGNGSPDRGS PNESDRKRMR RPYQSKTFKV EISFAAKIPM QAIANALRGQ
201: ESENSQEALR VLDIILRQHA SKQGCLLVRQ SFFHNDPKNF IDLGGGVLGC RGFHSSFRTT QGGLSLNIDV STTMIVQPGP VVDFLIANQN ARDPFSLDWA
301: KAKKMLKNLR VKTSPSNTEY KITGLSEKPC KEQLFTLKQR NGKDENGEAQ TIEVTVFDYF VNHRRIELRY SADLPCINVG KPKRPTYFPI ELCTLVSLQR
401: YTKALSTLQR ASLVERSRQK PQERIGVLTN ALRSNNYDAE PMLRSCGISI SRDLTQIEGR VLAAPRLKVG NGEDFFPRNG RWNFNNKKLV EPTKIERWAV
501: VNFSARCDIR NLVRELIKCG GMKGIHIDPP FDVFEENPQS RRAPPIVRVE KMFEEIQSKL PGAPQFLLCL LPERKNSDLY GPWKRKNLSE YGIVTQCIAP
601: TRVNDQYLTN VLLKINAKLG GLNSMLAVEH SPSIPIVSKG PTIILGMDVS HGSPGQSDVP SIAAVVSSRQ WPLISRYRAS VRTQSPKVEM IDSLYKRVSE
701: TEDEGIIREL LLDFYVSSGK RKPDQIIIFR DGVSESQFNQ VLNIELDQII EACKFLDEKW SPKFVVIVAQ KNHHTKFFQH GSPDNVPPGT VIDNKVCHPR
801: NNDFYLCAHA GMIGTTRPTH YHVLLDEVGF SSDDLQELVH SLSYVYQRST TAISVVAPIC YAHLAATQMS QFMKFEDTSE TSSSQGGLTS AGPVPVPQLP
901: KLQESVCNSM FFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.