Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | CDY07630 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDY60335 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDX70245 | AT5G04290.1 | 19410546 |
| AT2G27040.1 | CDY41384 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48192 | Canola | nucleus | 99.35 | 99.35 |
| Bra034318.1-P | Field mustard | nucleus | 99.24 | 99.24 |
| CDY04475 | Canola | nucleus | 96.2 | 96.1 |
| CDY56413 | Canola | nucleus | 95.34 | 95.23 |
| AT2G27040.1 | Thale cress | nucleus | 88.39 | 88.2 |
| Solyc01g008960.2.1 | Tomato | nucleus | 73.32 | 74.37 |
| PGSC0003DMT400058471 | Potato | nucleus | 73.21 | 74.26 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 73.1 | 73.82 |
| PGSC0003DMT400069459 | Potato | nucleus | 72.99 | 73.71 |
| Solyc06g073540.2.1 | Tomato | nucleus | 72.67 | 73.38 |
| KRH14678 | Soybean | nucleus | 71.69 | 72.96 |
| KRH73469 | Soybean | nucleus | 71.48 | 72.74 |
| CDY72062 | Canola | plastid | 22.67 | 70.37 |
| KRG89867 | Soybean | nucleus | 71.04 | 69.17 |
| CDY09103 | Canola | nucleus | 66.7 | 67.88 |
| Solyc06g073530.1.1 | Tomato | nucleus | 66.49 | 67.81 |
| Zm00001d040429_P012 | Maize | nucleus | 66.05 | 67.59 |
| Zm00001d008249_P012 | Maize | nucleus | 65.62 | 67.22 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 66.7 | 67.21 |
| OQU86696 | Sorghum | nucleus | 65.29 | 66.89 |
| Os04t0151800-02 | Rice | nucleus | 65.94 | 66.74 |
| Os01t0275600-01 | Rice | nucleus | 65.29 | 66.59 |
| TraesCS3A01G188400.1 | Wheat | nucleus | 64.53 | 64.96 |
| HORVU3Hr1G038830.1 | Barley | nucleus | 64.75 | 64.75 |
| EES18816 | Sorghum | nucleus | 63.56 | 64.47 |
| CDX92405 | Canola | nucleus | 63.77 | 64.26 |
| CDX92417 | Canola | nucleus | 44.58 | 63.82 |
| TraesCS7D01G458800.1 | Wheat | nucleus | 32.0 | 63.3 |
| TraesCS1D01G453600.1 | Wheat | nucleus | 63.23 | 63.23 |
| TraesCS1A01G445500.1 | Wheat | golgi, unclear | 63.23 | 63.03 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 64.43 | 62.92 |
| TraesCS1B01G480100.1 | Wheat | nucleus | 63.23 | 62.89 |
| CDX92406 | Canola | nucleus | 61.61 | 62.83 |
| Zm00001d039214_P025 | Maize | nucleus | 62.91 | 62.77 |
| CDY59516 | Canola | nucleus | 61.28 | 62.36 |
| CDY16587 | Canola | nucleus | 59.65 | 62.36 |
| TraesCS7A01G533100.1 | Wheat | cytosol | 59.87 | 61.27 |
| TraesCS7D01G520400.1 | Wheat | nucleus | 60.09 | 60.95 |
| CDY68123 | Canola | cytosol, endoplasmic reticulum, nucleus | 15.51 | 60.59 |
| TraesCS7B01G450300.1 | Wheat | nucleus | 59.22 | 59.41 |
| TraesCS3D01G191600.5 | Wheat | nucleus | 64.43 | 59.28 |
| CDY62055 | Canola | nucleus | 36.98 | 59.2 |
| CDY16595 | Canola | nucleus | 57.27 | 57.39 |
| TraesCS7B01G450200.2 | Wheat | nucleus | 57.48 | 57.24 |
| TraesCS7A01G521000.1 | Wheat | nucleus | 49.46 | 56.23 |
| TraesCS7B01G437900.1 | Wheat | cytosol | 48.7 | 55.64 |
| CDX84712 | Canola | nucleus | 51.74 | 55.02 |
| TraesCS7B01G437700.1 | Wheat | nucleus | 51.95 | 54.49 |
| CDX79495 | Canola | nucleus | 51.19 | 54.44 |
| EES00570 | Sorghum | nucleus | 52.28 | 53.67 |
| Os01t0275200-00 | Rice | golgi, peroxisome, plastid | 27.01 | 53.32 |
| TraesCS7B01G373400.1 | Wheat | nucleus | 43.71 | 51.27 |
| TraesCS7D01G458900.1 | Wheat | mitochondrion | 9.54 | 48.35 |
| HORVU7Hr1G107770.1 | Barley | nucleus | 29.72 | 45.82 |
| CDY04517 | Canola | plastid | 34.6 | 33.33 |
| CDX71410 | Canola | nucleus | 34.27 | 33.19 |
| CDX94724 | Canola | plastid | 34.06 | 32.01 |
| CDY22332 | Canola | plastid | 33.73 | 31.9 |
| CDY04311 | Canola | cytosol, nucleus, plastid | 33.62 | 31.63 |
| CDY41831 | Canola | nucleus | 34.71 | 30.65 |
| CDY68174 | Canola | nucleus | 34.92 | 30.61 |
| CDY23683 | Canola | cytosol, nucleus, plastid | 33.62 | 28.55 |
| CDY51501 | Canola | nucleus | 26.79 | 27.48 |
| CDY07349 | Canola | nucleus | 28.31 | 26.52 |
| CDY28550 | Canola | cytosol, plastid | 27.44 | 25.92 |
| CDY70429 | Canola | plastid | 24.73 | 25.7 |
| CDY25885 | Canola | cytosol | 25.81 | 23.56 |
| CDY02373 | Canola | nucleus | 25.6 | 23.07 |
| CDY55876 | Canola | cytosol | 25.6 | 22.8 |
Protein Annotations
| MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | GO:A0A078CIS4 | InterPro:ArgoL1 |
| InterPro:ArgoL2 | InterPro:Argonaute_Mid_dom | InterPro:Argonaute_N | EnsemblPlants:CDX77061 | ProteinID:CDX77061 | ProteinID:CDX77061.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0031047 | EnsemblPlantsGene:GSBRNA2T00127634001 | InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 |
| InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 | PFAM:PF02171 | PFAM:PF08699 | PFAM:PF16486 |
| PFAM:PF16487 | PFAM:PF16488 | PFscan:PS50821 | PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF20 |
| InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 | SMART:SM01163 | SUPFAM:SSF101690 |
| SUPFAM:SSF53098 | UniParc:UPI0004EE6A2D | SEG:seg | : | : | : |
Description
BnaC04g38560D
Coordinates
chrLK031809:-:813278..819167
Molecular Weight (calculated)
103115.0 Da
IEP (calculated)
8.828
GRAVY (calculated)
-0.421
Length
922 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASTGNGAE LESANGSGVS DALPPPPPII PPNVEPVRVQ TEVAVKKNLR VPMDRTGFGS KGQKIQLLTN HFGVKVANLQ GFFYHYSVAL FYDDGRPVEQ
101: KGVGRKVLDK VHETYHSDLD GKQFAYDGEK TLFTFGALPS NKMDFSVVLE EVSSARTTGN ASPNGNEEPS DGDRKRLRRP NRSKSFRVEI SYAAKIPLQA
201: LANAMRGQES ENSQEAIRVL DIILRQHAAR QGCLLVRQSF FHNDPSNCEP VGGNILGCRG FHSSFRTTQG GMSLNMDVTT TMIIKPGPLV DFVIANQGAK
301: DPFTVDWSKA KRTLKNLRIK VSPSNQEYRI TGMSDKPCRE QTFEYRPRNA PKNENGESET IEITVYDYFL RERNLELQYS ADLPCVNVGR PKRPTYIPLE
401: HCTLIPLQRY TKALNTFQRS ALVEKSRQKP QERMNVLSKA LKVSNYDAEP LLRSCGISIS SNFTQVEGRV LPAPKLKMGR GDELFPRNGR WNFNNKQFVE
501: PTKIDKWAVA NFSARCNVRQ LVDDLIRIGG MKGIEIAAPF DVFEEGHQFR RAPPMIRVEK MFEEIQSKLP GAPQFLLCLL PERKNCDIYG PWKKKNLTEY
601: GIVTQCMAPV RQPNDQYLTN CLLKINAKLG GLNSMLSVER TPAFTVISKV PTIILGMDVS HGSPGQSDVP SIAAVVSSRQ WPLVSKYRAS VRTQPSKAEM
701: IESLVKKNGT EDDGIIKELL VDFYTSSGKR KPEHIIIFRD GVSESQFNQV LNIELDQIIE ACKLLDENWN PKFLLLVAQK NHHTKFFQPN SPDNVPPGTI
801: IDNKICHPKN NDFYLCAHAG MIGTTRPTHY HVLYDEIHFS PDELQELVHS LSYVYQRSTT AISVVAPICY AHLAAAQLGT FMKFEDQSET SSSHGGVTAP
901: GPVSVAQLPK LKDNVANSMF FC
101: KGVGRKVLDK VHETYHSDLD GKQFAYDGEK TLFTFGALPS NKMDFSVVLE EVSSARTTGN ASPNGNEEPS DGDRKRLRRP NRSKSFRVEI SYAAKIPLQA
201: LANAMRGQES ENSQEAIRVL DIILRQHAAR QGCLLVRQSF FHNDPSNCEP VGGNILGCRG FHSSFRTTQG GMSLNMDVTT TMIIKPGPLV DFVIANQGAK
301: DPFTVDWSKA KRTLKNLRIK VSPSNQEYRI TGMSDKPCRE QTFEYRPRNA PKNENGESET IEITVYDYFL RERNLELQYS ADLPCVNVGR PKRPTYIPLE
401: HCTLIPLQRY TKALNTFQRS ALVEKSRQKP QERMNVLSKA LKVSNYDAEP LLRSCGISIS SNFTQVEGRV LPAPKLKMGR GDELFPRNGR WNFNNKQFVE
501: PTKIDKWAVA NFSARCNVRQ LVDDLIRIGG MKGIEIAAPF DVFEEGHQFR RAPPMIRVEK MFEEIQSKLP GAPQFLLCLL PERKNCDIYG PWKKKNLTEY
601: GIVTQCMAPV RQPNDQYLTN CLLKINAKLG GLNSMLSVER TPAFTVISKV PTIILGMDVS HGSPGQSDVP SIAAVVSSRQ WPLVSKYRAS VRTQPSKAEM
701: IESLVKKNGT EDDGIIKELL VDFYTSSGKR KPEHIIIFRD GVSESQFNQV LNIELDQIIE ACKLLDENWN PKFLLLVAQK NHHTKFFQPN SPDNVPPGTI
801: IDNKICHPKN NDFYLCAHAG MIGTTRPTHY HVLYDEIHFS PDELQELVHS LSYVYQRSTT AISVVAPICY AHLAAAQLGT FMKFEDQSET SSSHGGVTAP
901: GPVSVAQLPK LKDNVANSMF FC
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.