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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX84712 Canola nucleus 97.69 97.69
CDY68123 Canola cytosol, endoplasmic reticulum, nucleus 24.68 90.68
AT2G32940.1 Thale cress nucleus 85.24 84.17
Os07t0265600-01 Rice cytosol, nucleus 24.68 69.26
VIT_12s0059g01430.t01 Wine grape nucleus 65.17 61.41
KXG23356 Sorghum nucleus 62.4 61.41
KRH20672 Soybean nucleus 63.55 60.35
TraesCS5D01G169500.1 Wheat cytosol 60.9 59.86
TraesCS5A01G165900.1 Wheat cytosol 60.78 59.68
HORVU0Hr1G012490.1 Barley nucleus 60.67 59.57
CDY72062 Canola plastid 20.18 58.92
Solyc07g049500.2.1 Tomato nucleus 61.36 58.91
TraesCS5B01G162300.1 Wheat mitochondrion 60.9 58.8
GSMUA_Achr9P22630_001 Banana nucleus 60.55 58.59
Zm00001d019905_P003 Maize nucleus 61.36 57.76
CDX92417 Canola nucleus 40.72 54.81
GSMUA_Achr9P27810_001 Banana plastid 54.21 53.96
CDY09103 Canola nucleus 55.25 52.87
CDY16587 Canola nucleus 53.4 52.49
CDY04475 Canola nucleus 54.67 51.35
CDY56413 Canola nucleus 54.67 51.35
CDY48192 Canola nucleus 54.56 51.3
CDX92405 Canola nucleus 54.09 51.26
CDX92406 Canola nucleus 53.4 51.22
CDX77061 Canola nucleus 54.44 51.19
CDY59516 Canola nucleus 53.06 50.77
CDY16595 Canola nucleus 47.87 45.11
CDY62055 Canola nucleus 22.38 33.68
CDX71410 Canola nucleus 35.06 31.93
CDX94724 Canola plastid 35.99 31.8
CDY22332 Canola plastid 35.76 31.79
CDY04517 Canola plastid 35.06 31.77
CDY04311 Canola cytosol, nucleus, plastid 35.76 31.63
CDY41831 Canola nucleus 36.68 30.46
CDY68174 Canola nucleus 36.68 30.23
CDY23683 Canola cytosol, nucleus, plastid 35.64 28.45
CDY70429 Canola plastid 27.68 27.06
CDY51501 Canola nucleus 27.68 26.7
CDY07349 Canola nucleus 29.41 25.91
CDY28550 Canola cytosol, plastid 28.84 25.61
CDY25885 Canola cytosol 28.26 24.26
CDY55876 Canola cytosol 28.14 23.57
CDY02373 Canola nucleus 27.68 23.46
Protein Annotations
MapMan:12.5.1.13Gene3D:2.170.260.10Gene3D:3.30.420.10Gene3D:3.40.50.2300GO:A0A078CRP3InterPro:ArgoL1
InterPro:ArgoL2InterPro:Argonaute_NEnsemblPlants:CDX79495ProteinID:CDX79495ProteinID:CDX79495.1GO:GO:0003674
GO:GO:0003676GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00132241001InterPro:IPR003100InterPro:IPR003165
InterPro:IPR036397InterPro:PAZ_domInterPro:PAZ_dom_sfPFAM:PF02170PFAM:PF02171PFAM:PF08699
PFAM:PF16486PFAM:PF16488PFscan:PS50821PFscan:PS50822PANTHER:PTHR22891PANTHER:PTHR22891:SF35
InterPro:PiwiInterPro:RNaseH-like_sfInterPro:RNaseH_sfSMART:SM00950SMART:SM01163SUPFAM:SSF101690
SUPFAM:SSF53098UniParc:UPI0004EDE273SEG:seg:::
Description
BnaC03g18310D
Coordinates
chrLK031818:+:378890..383625
Molecular Weight (calculated)
97375.4 Da
IEP (calculated)
9.008
GRAVY (calculated)
-0.299
Length
867 amino acids
Sequence
(BLAST)
001: MPVTPEEPSR RDYAVTARLG VGSTGRRVQL CTNHFNVSVG QPDVVFYQYT VSITTEDGEN VQGKGISRKL IDQLYKTYSS DLDGKRLAFD GDKTLYTVGP
101: LPQNDFDFQV ILEASFSKRD CGVSDGGSPS GACKRSKRSF LPRCYRVQIR FSAEIPLKSV LVAQRGVDTS DNSTQDAIRV LDIVLRQQAA ERGCLLVRQA
201: FFHNDMNSVD VGGGVIGIRG FHSSFRPTHG GLSLNIDVST TMILKPGPVI EFLKANQNVE LPRQIDWIKA SKMLKHLRVK ASHRNMEFKI IGLSAKPCNQ
301: QLFTMKIKDG ECEGQTKEIT VYEYFKQTYT EPTYSAYLPC LDVGKPDRPN YLPLEFCNLV SLQRYTKALS VRQRALLVEK SRQKPLERIK ALNDAMHTYC
401: YDKDPFLAGS SISIEKQMTL AEGRVLNPPT LKFGKNEDFL PSNGRWNFNK KMLLEPRAIK NWAVVNFSFP CDSSHISREL ISCGMRKGIE IDRPFALVEE
501: EPQSKNLSAV KRVEKMIAKM KSKFPIDPPH FILCVLPERK NSDIYGPWKK VCLTEAGINT QCICPTKIND QYLTNVLLKI NSKLGGINSL LGIECSSNIP
601: LINKIPTLIL GMDVSHGSPG RADVPSVAAV VGSKNWPLIS RYRAAVRTQS PKMEMIDSLF QPVEDPVNGD NGIMNELFVE FFKTSNARKP KQIIIFRDGV
701: SESQFNQVLN IEVDQIIKAY QRLGETDVPK FTVIVAQKRH HTKLFQAKGH ENVPAGTVVD TKIVHPTNYD FYMCAHAGII GTSRPAHYHV LLDEIGFSPD
801: ELQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQFAQFT KFEDISEEKV PELPRLHERV ESNMFFC
Best Arabidopsis Sequence Match ( AT2G32940.1 )
(BLAST)
001: METSSSLPLS PISIEPEQPS HRDYDITTRR GVGTTGNPIE LCTNHFNVSV RQPDVVFYQY TVSITTENGD AVDGTGISRK LMDQLFKTYS SDLDGKRLAY
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC
Arabidopsis Description
AGO6Protein argonaute 6 [Source:UniProtKB/Swiss-Prot;Acc:O48771]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.