CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022918.1-P	Field mustard	nucleus	99.88	99.88
CDX79495	Canola	nucleus	97.69	97.69
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	24.57	90.25
AT2G32940.1	Thale cress	nucleus	84.78	83.71
Os07t0265600-01	Rice	cytosol, nucleus	24.8	69.58
KXG23356	Sorghum	nucleus	62.86	61.86
VIT_12s0059g01430.t01	Wine grape	nucleus	65.4	61.63
KRH20672	Soybean	nucleus	63.9	60.68
TraesCS5D01G169500.1	Wheat	cytosol	61.48	60.43
TraesCS5A01G165900.1	Wheat	cytosol	61.36	60.25
HORVU0Hr1G012490.1	Barley	nucleus	61.25	60.14
Solyc07g049500.2.1	Tomato	nucleus	62.05	59.58
TraesCS5B01G162300.1	Wheat	mitochondrion	61.36	59.24
GSMUA_Achr9P22630_001	Banana	nucleus	60.78	58.82
CDY72062	Canola	plastid	20.07	58.59
Zm00001d019905_P003	Maize	nucleus	61.94	58.31
CDX92417	Canola	nucleus	40.83	54.97
GSMUA_Achr9P27810_001	Banana	plastid	54.44	54.19
CDY09103	Canola	nucleus	55.71	53.31
CDY16587	Canola	nucleus	53.86	52.95
CDY56413	Canola	nucleus	55.25	51.9
CDY04475	Canola	nucleus	55.25	51.9
CDY48192	Canola	nucleus	55.13	51.84
CDX77061	Canola	nucleus	55.02	51.74
CDX92405	Canola	nucleus	54.21	51.37
CDX92406	Canola	nucleus	53.52	51.33
CDY59516	Canola	nucleus	53.17	50.88
CDY16595	Canola	nucleus	47.87	45.11
CDY62055	Canola	nucleus	22.38	33.68
CDX71410	Canola	nucleus	35.41	32.25
CDX94724	Canola	plastid	36.33	32.11
CDY22332	Canola	plastid	36.1	32.1
CDY04517	Canola	plastid	35.41	32.08
CDY04311	Canola	cytosol, nucleus, plastid	36.1	31.94
CDY41831	Canola	nucleus	37.02	30.75
CDY68174	Canola	nucleus	37.02	30.51
CDY23683	Canola	cytosol, nucleus, plastid	35.99	28.73
CDY70429	Canola	plastid	27.8	27.17
CDY51501	Canola	nucleus	27.45	26.47
CDY07349	Canola	nucleus	29.18	25.71
CDY28550	Canola	cytosol, plastid	28.6	25.41
CDY25885	Canola	cytosol	28.37	24.36
CDY55876	Canola	cytosol	28.26	23.67
CDY02373	Canola	nucleus	27.8	23.56

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:A0A078D6B6	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_N	EnsemblPlants:CDX84712	ProteinID:CDX84712	ProteinID:CDX84712.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00141994001	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699
PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF35
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690
SUPFAM:SSF53098	UniParc:UPI0004EDFE52	SEG:seg	:	:	:

Description

BnaA03g15180D

Coordinates

chrLK031838:-:871370..876317

Molecular Weight (calculated)

97204.1 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.300

Length

867 amino acids

Sequence
(BLAST)

001: MPVTPEEPSR RDYAVTARLG VGSTGRRIQL CTNHFNVSVG QPDVVFYQYT VSITTEDGEN VQGKGIGRKL IDQLYKTYSS DLDGKRLAFD GEKTLYTVGP
101: LPQNDFDFQV ILEASFSKRD CGVSDGGSPS GSSKRSKRSF LPRSYRVQIH FSAKIPLRSV LATQRGVDTS DNSTQDAVRV LDIVLRQQAA ERGCLLVRQA
201: FFLNDVNSVD VGGGVIGIRG FHSSFRPTDG GLSLNIDVST TMILKPGPVI EFLKANQNVE LPRQIDWIKA SKVLKNLRVK ASHRNMEFKI IGLSAKPCNQ
301: QLFTMKIKDG ECEGQTKEIT VYEYFKQTYT EPTYSAYLPC LDVGKPDRPN YLPLEFCNLV SLQRYTKALS VRQRALLVEK SRQKPLERIK ALNDAMHTYC
401: YDKDPFLAGS GISIEKQMTL AEGRVLNPPT LKFGKNEDFL PSNGRWNFNK KMLIEPRAIK NWAVVNFSFP CDSSHISREL ISCGMRKGIE IDRPFALVEE
501: EPQSKNLSAV KRVEKMIAKM KSKFPIDPPH FILCVLPERK NSDIYGPWKK VCLTEAGINT QCICPTKIND QYLTNVLLKI NSKLGGINSL LGIECSSNIP
601: LINKIPTLIL GMDVSHGSPG RADVPSIAAV VGSKNWPLIS RYRAAVRTQS PKMEMIDSLF QPVEDPVNGD NGIMNELFVE FFKTSNARKP KQIIIFRDGV
701: SESQFNQVLN IEVDQIIKAY QRLGETDVPK FTVIVAQKRH HTKLFQAKGH ENVPAGTVVD TKIVHPTNYD FYMCAHAGII GTSRPAHYHV LLDEIGFSPD
801: ELQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQFAQFT KFEDISEEKV PELPRLHERV ESNMFFC

Best Arabidopsis Sequence Match ( AT2G32940.1 )
(BLAST)

001: METSSSLPLS PISIEPEQPS HRDYDITTRR GVGTTGNPIE LCTNHFNVSV RQPDVVFYQY TVSITTENGD AVDGTGISRK LMDQLFKTYS SDLDGKRLAY
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC

Arabidopsis Description

AGO6Protein argonaute 6 [Source:UniProtKB/Swiss-Prot;Acc:O48771]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.