Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0059g01430.t01 | Wine grape | nucleus | 69.99 | 68.7 |
| Os07t0265600-01 | Rice | cytosol, nucleus | 23.03 | 67.31 |
| Bra022057.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 15.84 | 66.2 |
| CDY68123 | Canola | cytosol, endoplasmic reticulum, nucleus | 17.16 | 65.68 |
| KXG23356 | Sorghum | nucleus | 62.35 | 63.9 |
| TraesCS5D01G169500.1 | Wheat | cytosol | 61.9 | 63.38 |
| HORVU0Hr1G012490.1 | Barley | nucleus | 61.79 | 63.19 |
| TraesCS5A01G165900.1 | Wheat | cytosol | 61.79 | 63.19 |
| KRH20672 | Soybean | nucleus | 63.34 | 62.65 |
| Bra022918.1-P | Field mustard | nucleus | 59.69 | 62.17 |
| CDX84712 | Canola | nucleus | 59.58 | 62.05 |
| TraesCS5B01G162300.1 | Wheat | mitochondrion | 61.68 | 62.03 |
| AT2G32940.1 | Thale cress | nucleus | 60.24 | 61.96 |
| GSMUA_Achr9P22630_001 | Banana | nucleus | 61.46 | 61.94 |
| CDX79495 | Canola | nucleus | 58.91 | 61.36 |
| Zm00001d019905_P003 | Maize | nucleus | 62.13 | 60.91 |
| Solyc01g096750.1.1 | Tomato | nucleus | 57.59 | 59.02 |
| Solyc06g073540.2.1 | Tomato | nucleus | 58.8 | 58.16 |
| Solyc01g008960.2.1 | Tomato | nucleus | 57.36 | 56.99 |
| Solyc06g073530.1.1 | Tomato | nucleus | 56.04 | 55.97 |
| GSMUA_Achr9P27810_001 | Banana | plastid | 52.49 | 54.42 |
| Solyc03g111760.2.1 | Tomato | mitochondrion | 42.97 | 42.36 |
| Solyc12g006790.1.1 | Tomato | nucleus | 33.0 | 31.94 |
| Solyc09g082830.2.1 | Tomato | nucleus | 34.22 | 31.47 |
| Solyc03g098280.2.1 | Tomato | nucleus | 33.89 | 31.22 |
| Solyc06g072300.2.1 | Tomato | nucleus | 35.66 | 30.55 |
| Solyc06g074730.2.1 | Tomato | nucleus | 33.22 | 29.67 |
| Solyc01g010970.2.1 | Tomato | nucleus | 29.79 | 26.9 |
| Solyc02g069270.2.1 | Tomato | cytosol | 28.24 | 26.1 |
| Solyc02g069260.2.1 | Tomato | nucleus | 29.46 | 25.53 |
| Solyc02g069280.2.1 | Tomato | nucleus | 28.24 | 25.53 |
Protein Annotations
| MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | InterPro:ArgoL1 | InterPro:ArgoL2 |
| InterPro:Argonaute_N | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 |
| EMBL:JX467713 | UniProt:K4CF53 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 | PFAM:PF02171 |
| PFAM:PF08699 | PFAM:PF16486 | PFAM:PF16488 | PFscan:PS50821 | PFscan:PS50822 | PANTHER:PTHR22891 |
| PANTHER:PTHR22891:SF35 | InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 | SMART:SM01163 |
| SUPFAM:SSF101690 | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc07g049500.2 | EnsemblPlants:Solyc07g049500.2.1 | UniParc:UPI000276B250 | : |
Description
AGO6 [Source:UniProtKB/TrEMBL;Acc:K4CF53]
Coordinates
chr7:-:59770033..59780622
Molecular Weight (calculated)
101559.0 Da
IEP (calculated)
8.691
GRAVY (calculated)
-0.374
Length
903 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSEGRESC FSPVEEPPPV IMSNAEPERV DQPKRTIMMR AGDGTSGREI SLLANHLKVS IKCPDEIFYH YSVSITSDEK RAVNSKVIRR KIVDKLHETY
101: SSEFAGKKFA YDGEKNLYTV GPLPRNRLEF TVVVEESSAR QASESPSDNG SLNHSIKRFK HSLHSKAFLV EIDYAAKIPL RSVDLALQGA DPENVQDALR
201: VLDIILRQKA ANRGCLLVRQ SFFHDDSRNF TDVGGGVMSC RGLHSSFRPT DGGLTLNMDV STTMILSPGP VIDFLLANQN VKEPRYIDWA RAKRMLKNMR
301: VKAKHDNREF KIIGLTDKPC NQQLFSMKVK NGGSPDDGGE TLDITVYQYF TKHRNIELSS SVYMPCLDVG KPKRPNYLPL ELCYLVSLQR YTKALSSVQR
401: ASLVEKSRQK PRERIKVITD AVRDYSYDDD PLLVACGISI EKQLIQMNGR VLEAPKLKVG NGEEVTPCDG RWNFKNKHLF NPARIERWAV VNFSANCDTS
501: HLSRELISCG RSKGIHFERP HTLIEEDPQY RRAGPVVRVE QMFEEIIARL PGHPDFLLCV LPERKNSELY GPWKKKSLTD LGIVTQCISP LKITDRYLTN
601: VLLKINAKLG GTNSLLAMEH TSHLPLIKDT PTMILGMDVS HGSRVQSDIP SIAAVVGSLY WPLISKYKAV VRSQSPKLEI VESLYKPLPN GDDEGIMREL
701: LLDFYRTSNR HKPAQIIVFR DGVSESQFSQ VLNLELDQMI KAYKHLGEGG NPKFTLIVAQ KNHHTKLFQA NAVDNVPPGT VVDTNIVHPR NNDFFMCAHA
801: GMIGTTKPAH YHVLLDEIGF APDVLQNLIH SLSYVYQRST SATSIVAPVR YAHLAAQQFG QFDKYEDHSE TLSEQGSVKS IGTTPVTQLP RLHKNVSDSM
901: FFC
101: SSEFAGKKFA YDGEKNLYTV GPLPRNRLEF TVVVEESSAR QASESPSDNG SLNHSIKRFK HSLHSKAFLV EIDYAAKIPL RSVDLALQGA DPENVQDALR
201: VLDIILRQKA ANRGCLLVRQ SFFHDDSRNF TDVGGGVMSC RGLHSSFRPT DGGLTLNMDV STTMILSPGP VIDFLLANQN VKEPRYIDWA RAKRMLKNMR
301: VKAKHDNREF KIIGLTDKPC NQQLFSMKVK NGGSPDDGGE TLDITVYQYF TKHRNIELSS SVYMPCLDVG KPKRPNYLPL ELCYLVSLQR YTKALSSVQR
401: ASLVEKSRQK PRERIKVITD AVRDYSYDDD PLLVACGISI EKQLIQMNGR VLEAPKLKVG NGEEVTPCDG RWNFKNKHLF NPARIERWAV VNFSANCDTS
501: HLSRELISCG RSKGIHFERP HTLIEEDPQY RRAGPVVRVE QMFEEIIARL PGHPDFLLCV LPERKNSELY GPWKKKSLTD LGIVTQCISP LKITDRYLTN
601: VLLKINAKLG GTNSLLAMEH TSHLPLIKDT PTMILGMDVS HGSRVQSDIP SIAAVVGSLY WPLISKYKAV VRSQSPKLEI VESLYKPLPN GDDEGIMREL
701: LLDFYRTSNR HKPAQIIVFR DGVSESQFSQ VLNLELDQMI KAYKHLGEGG NPKFTLIVAQ KNHHTKLFQA NAVDNVPPGT VVDTNIVHPR NNDFFMCAHA
801: GMIGTTKPAH YHVLLDEIGF APDVLQNLIH SLSYVYQRST SATSIVAPVR YAHLAAQQFG QFDKYEDHSE TLSEQGSVKS IGTTPVTQLP RLHKNVSDSM
901: FFC
001: METSSSLPLS PISIEPEQPS HRDYDITTRR GVGTTGNPIE LCTNHFNVSV RQPDVVFYQY TVSITTENGD AVDGTGISRK LMDQLFKTYS SDLDGKRLAY
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC
Arabidopsis Description
AGO6Protein argonaute 6 [Source:UniProtKB/Swiss-Prot;Acc:O48771]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.