Factsheet for Bra022057.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	93.98	86.02
Os07t0265600-01	Rice	cytosol, nucleus	65.74	45.95
Bra022918.1-P	Field mustard	nucleus	88.89	22.15
AT2G32940.1	Thale cress	nucleus	82.41	20.27
VIT_12s0059g01430.t01	Wine grape	nucleus	72.69	17.07
KXG23356	Sorghum	nucleus	66.2	16.23
HORVU0Hr1G012490.1	Barley	nucleus	65.74	16.08
TraesCS5D01G169500.1	Wheat	cytosol	65.28	15.99
TraesCS5A01G165900.1	Wheat	cytosol	65.28	15.97
TraesCS5B01G162300.1	Wheat	mitochondrion	66.2	15.92
Solyc07g049500.2.1	Tomato	nucleus	66.2	15.84
Zm00001d019905_P003	Maize	nucleus	66.2	15.53
GSMUA_Achr9P22630_001	Banana	nucleus	63.89	15.4
KRH20672	Soybean	nucleus	64.81	15.33
Bra020152.1-P	Field mustard	nucleus	61.57	14.68
Bra034318.1-P	Field mustard	nucleus	62.04	14.53
Bra002361.1-P	Field mustard	nucleus	61.11	14.49
GSMUA_Achr9P27810_001	Banana	plastid	57.87	14.35
Bra002360.1-P	Field mustard	nucleus	59.26	13.76
Bra033698.1-P	Field mustard	plastid	45.37	10.06
Bra011993.1-P	Field mustard	plastid	44.91	10.04
Bra003999.1-P	Field mustard	nucleus	43.06	9.48
Bra014136.1-P	Field mustard	nucleus	46.76	9.36
Bra032254.1-P	Field mustard	nucleus	46.76	9.09
Bra040815.1-P	Field mustard	cytosol	37.04	7.93
Bra023172.1-P	Field mustard	nucleus	37.5	7.81
Bra002349.1-P	Field mustard	nucleus	57.41	7.29

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EnsemblPlantsGene:Bra022057	EnsemblPlants:Bra022057.1	EnsemblPlants:Bra022057.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003165
InterPro:IPR036397	UniProt:M4DZW0	PFAM:PF02171	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF35
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SUPFAM:SSF53098	TMHMM:TMhelix
UniParc:UPI0002545F46	:	:	:	:	:

Description

AT2G32940 (E=4e-039) AGO6 | AGO6 (ARGONAUTE 6); nucleic acid binding

Coordinates

chrA02:-:18932501..18933981

Molecular Weight (calculated)

24340.3 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.046

Length

216 amino acids

Sequence
(BLAST)

001: MGMDVSHGSP GRADVPSVAA VLLYSYFACP LFSVCLLFMS QPMLELFVEF FKTSNARKPK QIIIFRDGVS ESQFNQVLNI VVDQIIKAYQ RLGETDVPKF
101: TVIVAQKRHH TKLFQAKGHE NVPAGTVVDT KIGTSRPAHY HVLLDEIGFS PDELQNLIHS LSYVNQRSTT ATSIVRYAHL AAAQFAQFTK FEDVSEEKVP
201: ELPRLQERVE SNMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.