Factsheet for VIT_12s0059g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0265600-01	Rice	cytosol, nucleus	24.89	74.11
Bra022057.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	17.07	72.69
CDY68123	Canola	cytosol, endoplasmic reticulum, nucleus	18.26	71.19
Solyc07g049500.2.1	Tomato	nucleus	68.7	69.99
KXG23356	Sorghum	nucleus	66.09	69.01
TraesCS5D01G169500.1	Wheat	cytosol	64.67	67.46
GSMUA_Achr9P22630_001	Banana	nucleus	65.65	67.41
KRH20672	Soybean	nucleus	66.74	67.25
HORVU0Hr1G012490.1	Barley	nucleus	64.46	67.16
TraesCS5A01G165900.1	Wheat	cytosol	64.46	67.16
TraesCS5B01G162300.1	Wheat	mitochondrion	64.57	66.15
CDX84712	Canola	nucleus	61.63	65.4
Bra022918.1-P	Field mustard	nucleus	61.52	65.28
VIT_06s0009g01200.t01	Wine grape	nucleus	64.78	65.28
Zm00001d019905_P003	Maize	nucleus	65.33	65.26
CDX79495	Canola	nucleus	61.41	65.17
AT2G32940.1	Thale cress	nucleus	61.52	64.46
VIT_08s0040g00070.t01	Wine grape	nucleus	60.87	61.0
GSMUA_Achr9P27810_001	Banana	plastid	55.22	58.32
VIT_13s0175g00140.t01	Wine grape	nucleus	55.54	57.74
VIT_11s0016g04620.t01	Wine grape	cytosol	34.13	34.7
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	28.8	34.11
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	31.52	34.08
VIT_05s0020g04190.t01	Wine grape	nucleus	31.96	33.49
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	35.65	31.78
VIT_17s0053g00680.t01	Wine grape	nucleus	36.41	30.88
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	28.91	28.06
VIT_10s0042g01200.t01	Wine grape	nucleus	29.89	27.67
VIT_10s0042g01150.t01	Wine grape	nucleus	29.13	27.37
VIT_03s0038g00830.t01	Wine grape	nucleus	29.13	26.77
VIT_01s0113g00500.t01	Wine grape	nucleus	28.8	26.42

Protein Annotations

EntrezGene:100243183	wikigene:100243183	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300
EMBL:AM488799	InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	ProteinID:CAN71083	ProteinID:CAN71083.1
ProteinID:CCB51999	ProteinID:CCB51999.1	UniProt:F6HIF3	EMBL:FN595765	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	EntrezGene:LOC100243183	wikigene:LOC100243183	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF35	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI00021090BB
ArrayExpress:VIT_12s0059g01430	EnsemblPlantsGene:VIT_12s0059g01430	EnsemblPlants:VIT_12s0059g01430.t01	RefSeq:XP_002271447	RefSeq:XP_002271447.2	SEG:seg

Description

No Description!

Coordinates

chr12:+:6352396..6365776

Molecular Weight (calculated)

102854.0 Da

IEP (calculated)

9.439

GRAVY (calculated)

-0.305

Length

920 amino acids

Sequence
(BLAST)

001: MKIEKELKFY CFNCKMEKTG IEEASGTPPL PPSPSIPPNV KPEQVGPPKR SVISRRGVGT AGRRISLLTN HFKVSMNISD AMFYQYSVSI TSEDKRVVDG
101: KGIGRKVIDR LYLTYSSELA GKKFAYDGEK SLYTVGPLPQ NNFEFTVVVE ELLARRHVLC PILTSHSPWC GSANGSPGAN GSPSGNGKRP KCSFRSKTFK
201: VAISYAAKIP LKSIVLALKG SEVDNNAQDA LRVLDIILRQ QAANRGCLLV RQSFFHDDSR HFTDVGGGVT GCRGFHSSFR TTQGGLSLNM DVSTTMILTP
301: GPVIDFLLAK KMLKNMRIKT KHSNMEFKIT GLSEKPCNLQ HFPLKMRNSD DANDEDQTVE ITVYEYFTKH RGIELSISAY MPCLNVGKPK RPNYLPLELC
401: LLVSLQRYTK ALSIMQRSTL VEKSRQKPQD RIRTVTDAVR NYQYDEDPVL SACGISIDRQ LTQVDGRVLE APKLKVGNSE DCIPRNGRWN FNHKKLLTPV
501: RIERWAVVNF SARCDTSHLS RELINCGRNK GILIERPHTL IEEDPQSRRA SPVARVEKMF EIVRAKLPGP PEFLLCVLPE KKNSEIYGPW KKRSLSDFGI
601: VTQCISPTKI NDQYLTNVLL KINTKLGGTN SLLAIEHTSR IPLIKDTPTM ILGMDVSHGS PGQADVPSIA AVVGSRCWPL ISRYRASVRT QSPKVEMIDA
701: LYKPLANGND DGMIRELLVD FFQTSNGRKP AQIVIFRDGV SESQFNQVLN IELEQIMKAY QHLGEVDFPK FTVIVAQKNH HTKLFQAGAP ENVPPGTVVD
801: TKIVHPRNYD FYMCAHAGMI GTSRPAHYHV LLDEISFSPD DLQHLIHSLS YVYQRSTTAI SIVAPVCYAH LAAQQMGQFI KFDDLSETSS AKRAITTEES
901: VPVPELPRLH ENVRGSMFFC

Best Arabidopsis Sequence Match ( AT2G32940.1 )
(BLAST)

001: METSSSLPLS PISIEPEQPS HRDYDITTRR GVGTTGNPIE LCTNHFNVSV RQPDVVFYQY TVSITTENGD AVDGTGISRK LMDQLFKTYS SDLDGKRLAY
101: DGEKTLYTVG PLPQNEFDFL VIVEGSFSKR DCGVSDGGSS SGTCKRSKRS FLPRSYKVQI HYAAEIPLKT VLGTQRGAYT PDKSAQDALR VLDIVLRQQA
201: AERGCLLVRQ AFFHSDGHPM KVGGGVIGIR GLHSSFRPTH GGLSLNIDVS TTMILEPGPV IEFLKANQSV ETPRQIDWIK AAKMLKHMRV KATHRNMEFK
301: IIGLSSKPCN QQLFSMKIKD GEREVPIREI TVYDYFKQTY TEPISSAYFP CLDVGKPDRP NYLPLEFCNL VSLQRYTKPL SGRQRVLLVE SSRQKPLERI
401: KTLNDAMHTY CYDKDPFLAG CGISIEKEMT QVEGRVLKPP MLKFGKNEDF QPCNGRWNFN NKMLLEPRAI KSWAIVNFSF PCDSSHISRE LISCGMRKGI
501: EIDRPFALVE EDPQYKKAGP VERVEKMIAT MKLKFPDPPH FILCILPERK TSDIYGPWKK ICLTEEGIHT QCICPIKISD QYLTNVLLKI NSKLGGINSL
601: LGIEYSYNIP LINKIPTLIL GMDVSHGPPG RADVPSVAAV VGSKCWPLIS RYRAAVRTQS PRLEMIDSLF QPIENTEKGD NGIMNELFVE FYRTSRARKP
701: KQIIIFRDGV SESQFEQVLK IEVDQIIKAY QRLGESDVPK FTVIVAQKNH HTKLFQAKGP ENVPAGTVVD TKIVHPTNYD FYMCAHAGKI GTSRPAHYHV
801: LLDEIGFSPD DLQNLIHSLS YVNQRSTTAT SIVAPVRYAH LAAAQVAQFT KFEGISEDGK VPELPRLHEN VEGNMFFC

Arabidopsis Description

AGO6Protein argonaute 6 [Source:UniProtKB/Swiss-Prot;Acc:O48771]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.