Factsheet for VIT_06s0061g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015926_P001	Maize	nucleus	15.79	72.44
TraesCS4B01G026600.1	Wheat	cytosol	31.59	67.22
EER90726	Sorghum	cytosol	54.65	66.43
Zm00001d018436_P001	Maize	cytosol	7.85	66.39
CDX71410	Canola	nucleus	60.85	65.97
CDY04517	Canola	plastid	60.17	64.89
TraesCS5A01G446000.1	Wheat	cytosol	53.1	64.55
Bra011993.1-P	Field mustard	plastid	60.27	64.39
TraesCS4A01G288300.1	Wheat	plastid	53.39	64.29
TraesCS4D01G024100.1	Wheat	plastid	53.0	63.83
KRH25139	Soybean	plastid	59.4	63.79
OQU91198	Sorghum	nucleus	45.83	63.66
TraesCS5B01G468000.1	Wheat	plastid	53.2	62.89
TraesCS4D01G024300.1	Wheat	cytosol	33.33	62.55
KRH30536	Soybean	plastid	53.78	62.36
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.95	62.34
HORVU2Hr1G031130.2	Barley	cytosol, nucleus	50.58	61.92
OQU88608	Sorghum	plastid	52.71	61.75
OQU91197	Sorghum	plastid	52.81	61.65
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	59.5	61.58
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	27.03	61.05
TraesCS4A01G288000.1	Wheat	cytosol	41.96	60.39
Zm00001d032611_P002	Maize	vacuole	21.61	59.95
TraesCS5D01G454600.1	Wheat	cytosol	42.93	59.78
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	44.48	59.07
TraesCS3B01G287600.1	Wheat	nucleus	51.84	59.05
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	48.06	58.28
TraesCS5B01G454200.1	Wheat	cytosol	38.08	58.22
Os03t0800200-01	Rice	plasma membrane	58.62	57.18
Os03t0682600-00	Rice	nucleus	41.38	57.16
VIT_11s0016g04620.t01	Wine grape	cytosol	49.81	56.8
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	56.1	56.49
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	11.14	56.37
TraesCS5B01G451400.2	Wheat	plastid	57.36	55.85
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	56.88	55.75
Solyc06g074730.2.1	Tomato	nucleus	54.36	55.49
TraesCS5B01G452500.1	Wheat	nucleus	48.84	55.26
TraesCS2B01G195200.2	Wheat	nucleus	53.97	55.26
VIT_05s0020g04190.t01	Wine grape	nucleus	47.0	55.24
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	52.62	55.13
TraesCS2A01G168900.1	Wheat	cytosol	54.94	54.68
TraesCS2D01G176500.1	Wheat	golgi, unclear	54.94	54.68
Zm00001d036886_P001	Maize	plastid	11.92	54.42
Zm00001d025691_P001	Maize	mitochondrion	10.27	54.36
VIT_17s0053g00680.t01	Wine grape	nucleus	57.07	54.29
Zm00001d013063_P001	Maize	nucleus	53.1	54.26
Zm00001d009158_P003	Maize	golgi	22.97	54.23
TraesCS4B01G024000.1	Wheat	nucleus	53.0	53.42
Zm00001d013542_P003	Maize	nucleus	54.26	53.08
HORVU4Hr1G004030.1	Barley	mitochondrion	52.71	52.66
Zm00001d007786_P001	Maize	nucleus	52.52	52.52
Os07t0188000-01	Rice	nucleus	53.1	52.09
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	17.44	50.14
GSMUA_Achr6P04510_001	Banana	nucleus	57.17	47.7
Zm00001d033518_P001	Maize	nucleus	53.97	46.92
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.45	45.92
TraesCS7A01G067500.2	Wheat	cytosol	37.02	44.73
TraesCS5B01G458100.1	Wheat	cytosol	40.12	43.58
Os02t0616300-00	Rice	vacuole	13.18	41.09
Zm00001d039440_P001	Maize	cytosol	8.91	37.7
VIT_06s0009g01200.t01	Wine grape	nucleus	32.75	37.02
TraesCS5D01G192700.2	Wheat	nucleus	33.62	36.8
VIT_12s0059g01430.t01	Wine grape	nucleus	31.78	35.65
VIT_01s0113g00500.t01	Wine grape	nucleus	34.21	35.19
VIT_03s0038g00830.t01	Wine grape	nucleus	33.62	34.67
VIT_08s0040g00070.t01	Wine grape	nucleus	30.81	34.64
VIT_13s0175g00140.t01	Wine grape	nucleus	29.07	33.9
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	30.72	33.44
EER93271	Sorghum	cytosol	32.17	32.81
VIT_10s0042g01150.t01	Wine grape	nucleus	31.1	32.79
VIT_10s0042g01200.t01	Wine grape	nucleus	31.3	32.49
Zm00001d035554_P001	Maize	plastid	14.63	30.02
Os03t0789500-01	Rice	cytosol	0.48	2.2

Protein Annotations

EntrezGene:100258447	wikigene:100258447	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ProteinID:CBI17106	ProteinID:CBI17106.3
UniProt:D7SN77	EMBL:FN594957	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EntrezGene:LOC100258447	wikigene:LOC100258447	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	TIGR:TC53463
TIGR:TC66787	UniParc:UPI0001BE0EB6	ArrayExpress:VIT_06s0061g01040	EnsemblPlantsGene:VIT_06s0061g01040	EnsemblPlants:VIT_06s0061g01040.t01	unigene:Vvi.12703
RefSeq:XP_002271699	RefSeq:XP_002271699.2	RefSeq:XP_010651834.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:18665428..18674795

Molecular Weight (calculated)

114466.0 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.488

Length

1032 amino acids

Sequence
(BLAST)

0001: MSRRGGAGGR RSDSRRDQTS QAPGPSFNRG GEGGRGGGGG RGGGGGRGGG GGRGRGSGAA AAGGSRPASE PHSPAAFPPL ASPSPSASTS TASLSQKFDQ
0101: SLTLQSPAPV RRQPSDPVRP QPQPHPQPPP PVQAQPTPPV PTQPQPSSSY QASSSSQATG VEVPPSTSKA ITFPRRPGYG TVGRKCKVRA NHFQVQVDDR
0201: EFCHYDVTIT PEVMSKTLNR EIIKQLVDLY KVSHLGKRSP AYDGSKSLYT AGPLPFTSKE FVVKLVKTDD GAGPRREREF KVAIKLASKG DLYQLQQFLC
0301: GRQLSAPQET IQILDVVLRA SPSEKYTVVG RSFFSTQLGR KGELGDGLEY WRGYYQSLRP TQMGLSFNID VSARSFYESI LVTDFVAKHL KLRDVSRALS
0401: DQDRIKVKKA LKGVKVQLTH REFAKRYKIA GVSSQPTNQL MFTLDDEATR VSVVQYFRQK YNIVLKYPSW PSLQAGSDSK PIYLPMEVCK IVEGQRYTRK
0501: LNDRQVTALL RATCQRPSER EGNIQEMVRK NNFSTDRVVR DEFGIRINEE LTLVDARVLP PPMLKYHDSG REAKVDPRVG QWNMIDKKMV NGGTVQFWTC
0601: LNFSFRVHQD LPSGFCRELV NMCVSKGMVF NPNPLLPIQS AHPNQIEKVL VDVHKQSMAK LASMGQNGKQ LQLLIIILPD VTGSYGKIKR ICETELGIVS
0701: QCCQPSQASK LNKQYFENVA LKINVKVGGR NTVLFDAIQR KIPLVSDLPT IIFGADVTHP QPGEDSSPSI AAVVASMDWP EVTKYRGLVS AQHHREEIIQ
0801: DLYKTTADPH KGVTHGGMIR ELLIAFRRST GYKPSRIIFY RDGVSEGQFS QVLLHEMDSI RKACASLEEG YLPPVTFVVV QKRHHTRFFP SDHRSRDLTD
0901: RSGNILPGTV VDTKICHPTE FDFYLNSHAG IQGTSRPTHY HVLYDENKFT ADILQILTNN LCYTYARCTR SVSIVPPAYY AHLAAFRARY YIEGDTSDSG
1001: SGSGDRSTRE RNLEVRLLPA VKENVKDVMF YC

Best Arabidopsis Sequence Match ( AT2G27880.1 )
(BLAST)

001: MSNRGGGGHG GASRGRGGGR RSDQRQDQSS GQVAWPGLQQ SYGGRGGSVS AGRGRGNVGR GENTGDLTAT QVPVASAVSG GRGRGNIGDP TFSVASSSKT
101: VSVASSSKEE SKNTEVSETM SNLQITSTET KPEMTSLPPA SSKAVTFPVR PGRGTLGKKV MVRANHFLVQ VADRDLYHYD VSINPEVISK TVNRNVMKLL
201: VKNYKDSHLG GKSPAYDGRK SLYTAGPLPF DSKEFVVNLA EKRADGSSGK DRPFKVAVKN VTSTDLYQLQ QFLDRKQREA PYDTIQVLDV VLRDKPSNDY
301: VSVGRSFFHT SLGKDARDGR GELGDGIEYW RGYFQSLRLT QMGLSLNIDV SARSFYEPIV VTDFISKFLN IRDLNRPLRD SDRLKVKKVL RTLKVKLLHW
401: NGTKSAKISG ISSLPIRELR FTLEDKSEKT VVQYFAEKYN YRVKYQALPA IQTGSDTRPV YLPMELCQID EGQRYTKRLN EKQVTALLKA TCQRPPDREN
501: SIKNLVVKNN YNDDLSKEFG MSVTTQLASI EARVLPPPML KYHDSGKEKM VNPRLGQWNM IDKKMVNGAK VTSWTCVSFS TRIDRGLPQE FCKQLIGMCV
601: SKGMEFKPQP AIPFISCPPE HIEEALLDIH KRAPGLQLLI VILPDVTGSY GKIKRICETE LGIVSQCCQP RQVNKLNKQY MENVALKINV KTGGRNTVLN
701: DAIRRNIPLI TDRPTIIMGA DVTHPQPGED SSPSIAAVVA SMDWPEINKY RGLVSAQAHR EEIIQDLYKL VQDPQRGLVH SGLIREHFIA FRRATGQIPQ
801: RIIFYRDGVS EGQFSQVLLH EMTAIRKACN SLQENYVPRV TFVIVQKRHH TRLFPEQHGN RDMTDKSGNI QPGTVVDTKI CHPNEFDFYL NSHAGIQGTS
901: RPAHYHVLLD ENGFTADQLQ MLTNNLCYTY ARCTKSVSIV PPAYYAHLAA FRARYYMESE MSDGGSSRSR SSTTGVGQVI SQLPAIKDNV KEVMFYC

Arabidopsis Description

AGO5Protein argonaute 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.