Factsheet for Zm00001d013063_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90726	Sorghum	cytosol	73.27	87.16
TraesCS5A01G446000.1	Wheat	cytosol	68.42	81.39
Os03t0800200-01	Rice	plasma membrane	81.78	78.07
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	35.15	77.68
TraesCS5B01G451400.2	Wheat	plastid	80.69	76.89
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	80.0	76.73
TraesCS5B01G454200.1	Wheat	cytosol	50.1	74.96
TraesCS3B01G287600.1	Wheat	nucleus	66.34	73.95
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	71.49	73.3
Zm00001d018436_P001	Maize	cytosol	8.71	72.13
TraesCS5D01G454600.1	Wheat	cytosol	51.19	69.77
TraesCS5B01G452500.1	Wheat	nucleus	62.08	68.75
Zm00001d015926_P001	Maize	nucleus	15.05	67.56
Zm00001d032611_P002	Maize	vacuole	24.36	66.13
Zm00001d005045_P001	Maize	cytosol, nucleus, peroxisome, plastid	14.75	64.5
Zm00001d009158_P003	Maize	golgi	26.44	61.1
Zm00001d026146_P001	Maize	nucleus	8.81	60.96
Zm00001d036886_P001	Maize	plastid	12.87	57.52
Zm00001d044183_P001	Maize	cytosol	10.0	55.8
Zm00001d007786_P001	Maize	nucleus	55.45	54.26
CDX71410	Canola	nucleus	50.3	53.36
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	54.26	53.1
CDY04517	Canola	plastid	50.3	53.08
Bra011993.1-P	Field mustard	plastid	50.4	52.69
Zm00001d037833_P001	Maize	mitochondrion	12.77	52.02
KRH25139	Soybean	plastid	48.71	51.2
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	49.8	50.45
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	42.18	50.06
Zm00001d013542_P003	Maize	nucleus	51.88	49.67
KRH30536	Soybean	plastid	43.66	49.55
TraesCS5B01G458100.1	Wheat	cytosol	45.84	48.74
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	48.22	47.51
Zm00001d036917_P009	Maize	nucleus	45.35	47.41
Solyc06g074730.2.1	Tomato	nucleus	47.43	47.38
TraesCS5D01G192700.2	Wheat	nucleus	42.77	45.81
Zm00001d046438_P003	Maize	cytosol	45.45	45.67
Zm00001d026111_P014	Maize	nucleus	49.51	45.66
Zm00001d011096_P059	Maize	nucleus	50.0	45.58
Zm00001d002650_P003	Maize	nucleus	50.2	45.03
Zm00001d025691_P001	Maize	mitochondrion	8.61	44.62
Zm00001d025331_P002	Maize	cytosol	24.16	44.2
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	50.0	43.95
Zm00001d033518_P001	Maize	nucleus	51.49	43.81
Zm00001d025073_P001	Maize	cytosol	16.53	43.04
Zm00001d014875_P001	Maize	nucleus	44.95	42.08
Zm00001d021345_P001	Maize	nucleus	37.43	40.69
Zm00001d039440_P001	Maize	cytosol	9.7	40.16
Zm00001d006351_P001	Maize	nucleus	40.2	38.56
Zm00001d033206_P001	Maize	cytosol	32.77	34.27
Zm00001d040429_P012	Maize	nucleus	27.82	31.19
Zm00001d008249_P012	Maize	nucleus	27.72	31.11
Zm00001d039214_P025	Maize	nucleus	27.92	30.52
Zm00001d002316_P003	Maize	plastid	25.74	30.37
Zm00001d019905_P003	Maize	nucleus	27.33	29.97
Zm00001d029573_P001	Maize	cytosol	30.2	29.55
Zm00001d026300_P001	Maize	nucleus	25.54	29.28
Zm00001d035554_P001	Maize	plastid	13.96	28.03
Os03t0789500-01	Rice	cytosol	0.89	3.96

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A1D6GFG2	ProteinID:AQK62310.1	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000844B045
EnsemblPlantsGene:Zm00001d013063	EnsemblPlants:Zm00001d013063_P001	EnsemblPlants:Zm00001d013063_T001	SEG:seg	:	:

Description

argonaute5c argonaute5c

Coordinates

chr5:+:4109487..4117972

Molecular Weight (calculated)

111898.0 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.405

Length

1010 amino acids

Sequence
(BLAST)

0001: MAYRGGGGRG GGGRDGDQQR PPHVHGRGAG GPGGGRTFVW PPPPSSTPRP VPPYHHHHHH QVPMGYRAPI VLPHQAAYGV PMAVYRGAPA PAYRVPAPAS
0101: PRPRVSFSPA PPASPVTIRA PPPSPTTPPA APTTPAPPRQ PAPAPAPEPA PAPPPAPSLA ALAKEVEKKL FVSETALAPA AAAAAAAAAQ GTAGAGADDA
0201: ASDVDLAPVS KKGLAHPARP ALATVGRNVF VRANHFLVHV ADNNLFHYDV AINPESKSRA TNREVLNELI KLHGKTSLGG KLPAYDGRKS LYTAGSLPFE
0301: SEEFVVTLVD PEKKEKERVE REYKITIRIA GRTDFYHLQQ FLLGRQRDMP QETIQVLDVV LRESPSWNYV TVSRSFFSTT FGHRGDIGEG LECWRGYYQS
0401: LRPTQMGLSL NIDISATSFF KPVTIIKFVE EFLNLRDTSR PLFDRDRVKI KKALRGVRIE TTHQQDQIRR YKITGITPIP MSQLIFPVDD KGTRKTVVQY
0501: FLDKYDYRLK YVSWPCLQAG SDSRPVYLPM EVCKIVEGQR YSKKLNDRQV TNILRATCKR PQEREKSIRD MVLHNKYADD KFAQEFGIEV SSDLVTVPAR
0601: VLPPPLLKYH DSGREKTCAP SVGQWNMINK KMINGGTIDN WTCLNFSRMR PDEVQRFCMD LTHMCNATGM VVNPRPFIEV RSAAPNHIEN ALRDVHKRAT
0701: QILAQQAVGN QLQLLIVILP EVSGSYGKIK RVCETDIGIV SQCCLPKHAS RPNKQYLENV ALKINVKVVA SMDWPEITKY RGLVSAQPHR QEIIEDLFTV
0801: SKDPQMGHNV NGGMIRDGVS EGQFSHVLLH EMDAIRKACA SLEEGYLPPV TFVVVQKRHH TRLFPEVHGR RDMTDKSGNI LPGTVVDQMI CHPTEFDFYL
0901: CSHAGIQGTS RPTHYHVLYD ENEFTADALQ SLTNNLCYTY ARCTRAVSVV PPAYYAHLAA FRARYYVEGE SSDGGSTPGS SGQTVAREGP VEVRQLPKIK
1001: DNVKDVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.