Factsheet for TraesCS5D01G454200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G446000.1	Wheat	cytosol	79.39	98.47
TraesCS3B01G287600.1	Wheat	nucleus	76.73	89.18
EER90726	Sorghum	cytosol	71.32	88.46
TraesCS5D01G454600.1	Wheat	cytosol	61.54	87.45
Os03t0800200-01	Rice	plasma membrane	84.14	83.74
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	36.28	83.59
Zm00001d013063_P001	Maize	nucleus	76.73	80.0
Zm00001d032611_P002	Maize	vacuole	25.74	72.85
Zm00001d009158_P003	Maize	golgi	27.54	66.36
TraesCS4D01G024100.1	Wheat	plastid	51.66	63.48
TraesCS4D01G024300.1	Wheat	cytosol	32.57	62.36
TraesCS7D01G552900.1	Wheat	mitochondrion	26.69	61.76
TraesCS2D01G176500.1	Wheat	golgi, unclear	59.26	60.17
TraesCS7D01G553200.1	Wheat	nucleus, plastid	27.35	60.13
CDX71410	Canola	nucleus	52.8	58.4
CDY04517	Canola	plastid	52.71	57.99
Bra011993.1-P	Field mustard	plastid	52.8	57.56
Zm00001d036886_P001	Maize	plastid	12.25	57.08
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.75	56.88
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	52.99	55.97
TraesCS5D01G192700.2	Wheat	nucleus	49.76	55.57
KRH25139	Soybean	plastid	50.71	55.57
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	44.16	54.64
KRH30536	Soybean	plastid	46.15	54.61
TraesCS7D01G351700.1	Wheat	cytosol	48.62	53.78
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	50.81	52.2
Solyc06g074730.2.1	Tomato	nucleus	49.76	51.83
TraesCS2D01G400200.1	Wheat	nucleus	53.09	50.86
TraesCS7D01G553000.1	Wheat	cytosol	49.76	50.82
TraesCS6D01G166300.1	Wheat	plastid	45.77	50.68
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	39.7	49.76
TraesCS6D01G403900.1	Wheat	plastid	49.76	49.67
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	50.9	48.16
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.84	47.63
TraesCS1D01G151300.3	Wheat	plastid	37.89	47.0
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	52.99	46.12
Zm00001d039440_P001	Maize	cytosol	9.4	40.57
TraesCS7D01G458800.1	Wheat	nucleus	17.38	39.27
TraesCS5D01G169500.1	Wheat	cytosol	29.25	34.92
TraesCS7D01G520400.1	Wheat	nucleus	29.25	33.88
TraesCS1D01G453600.1	Wheat	nucleus	29.63	33.84
TraesCS3D01G191600.5	Wheat	nucleus	30.01	31.54
TraesCS2D01G417000.1	Wheat	nucleus	30.29	30.44
Zm00001d035554_P001	Maize	plastid	14.43	30.22
TraesCS2D01G412100.1	Wheat	plastid	31.34	29.54
TraesCS2D01G416500.1	Wheat	nucleus	25.64	25.54
TraesCS7D01G458900.1	Wheat	mitochondrion	3.89	22.53
Os03t0789500-01	Rice	cytosol	0.76	3.52

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5D01G454200
EnsemblPlants:TraesCS5D01G454200.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:501208254..501217022

Molecular Weight (calculated)

116388.0 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.402

Length

1053 amino acids

Sequence
(BLAST)

0001: MAYRGGGGRG GRGDQQYGGG RGAPAGGGRG GGRGPTGFVW PPPGAPSAPR PAAPAQYAPA VAIYHNPNAT GPHQGAYQHG VVVRNPAPAP YATVRAPSPT
0101: PVTIRAPSPT PATIRAPAPT PSPAAAPFQP DRVSAPAPAP PTPASVAKEL EQKLFVTETA LAPPAAAAAA AVAAMQPEEE KAPDVDLAPV SKKGLAHPAR
0201: PGAGTVGKKV MIRANHFLVN VADNNLFHYD VSINPESKSR AVNREVLSEL IKLHGKTSLG GKLPAYDGRK SLYTAGSLPF ESEEFSVTLV DPEKKDKEKA
0301: EREYKITIRI AGRTDLYHLQ QFLKGRQRDM PQETIQVLDV VLRESPSWNY VTVSRSFFST TFGHRGDIGE GLECWRGYYQ SLRPTQMGLS LNIDISATSF
0401: FKPVTVVQFV LEFLNLRDTS RPLTDRDRVK IKKALRGVRV ETNHQEDQIR RYKITGITPV PMSQLIFPVD ERGTRMSVVQ YFMQRYKYNL QYTSWPCLQS
0501: GSDARPVYLP MEACKIVEGQ RYSKKLNDKQ VTNILRATCQ RPQQREQSIR EYAEDKFAQE FGINVCSDLV SVPARVLPPP MLRYHDSGKE KTCAPSVGQW
0601: NMINKKMING GIIDNWACVS FSRMRPEEVH RFCCDLIQMC NMTGMSVNPR PLVDNRSASP NHIENALRDV YRRTTEMLGK QGHEKQLQLL IVILPEVSGS
0701: YGKIKKVCET DLGIVSQCCL PRHAARPNKQ YLENVALKIN VKVGGRNTVL ERAFVRNGIP FVSEVPTIIF GADVTHPPPG EDSASSIAAV VASMDWPEIT
0801: KYRGLVSAQP HRQEIIEDLF SVTKDPQRGN VNGGMIRELL IAFRRKTGQR PERILFYRDG VSEGQFSHVL LHEMDAIRKA CASLEEGYMP PVTFVVVQKR
0901: HHTRLFPEVH GRRDMTDKSG NILPGTVVDL MICHPTEFDF YLCSHAGIQG TSRPTHYHVL YDENHFTADA LQSLTNNLCY TYARCTRAVS VVPPAYYAHL
1001: AAFRARYYVE GDSSDGGSTP GSSGQAAIAR EGPVEVRQLP KIKDNVKDVM FYC

Best Arabidopsis Sequence Match ( AT2G27880.1 )
(BLAST)

001: MSNRGGGGHG GASRGRGGGR RSDQRQDQSS GQVAWPGLQQ SYGGRGGSVS AGRGRGNVGR GENTGDLTAT QVPVASAVSG GRGRGNIGDP TFSVASSSKT
101: VSVASSSKEE SKNTEVSETM SNLQITSTET KPEMTSLPPA SSKAVTFPVR PGRGTLGKKV MVRANHFLVQ VADRDLYHYD VSINPEVISK TVNRNVMKLL
201: VKNYKDSHLG GKSPAYDGRK SLYTAGPLPF DSKEFVVNLA EKRADGSSGK DRPFKVAVKN VTSTDLYQLQ QFLDRKQREA PYDTIQVLDV VLRDKPSNDY
301: VSVGRSFFHT SLGKDARDGR GELGDGIEYW RGYFQSLRLT QMGLSLNIDV SARSFYEPIV VTDFISKFLN IRDLNRPLRD SDRLKVKKVL RTLKVKLLHW
401: NGTKSAKISG ISSLPIRELR FTLEDKSEKT VVQYFAEKYN YRVKYQALPA IQTGSDTRPV YLPMELCQID EGQRYTKRLN EKQVTALLKA TCQRPPDREN
501: SIKNLVVKNN YNDDLSKEFG MSVTTQLASI EARVLPPPML KYHDSGKEKM VNPRLGQWNM IDKKMVNGAK VTSWTCVSFS TRIDRGLPQE FCKQLIGMCV
601: SKGMEFKPQP AIPFISCPPE HIEEALLDIH KRAPGLQLLI VILPDVTGSY GKIKRICETE LGIVSQCCQP RQVNKLNKQY MENVALKINV KTGGRNTVLN
701: DAIRRNIPLI TDRPTIIMGA DVTHPQPGED SSPSIAAVVA SMDWPEINKY RGLVSAQAHR EEIIQDLYKL VQDPQRGLVH SGLIREHFIA FRRATGQIPQ
801: RIIFYRDGVS EGQFSQVLLH EMTAIRKACN SLQENYVPRV TFVIVQKRHH TRLFPEQHGN RDMTDKSGNI QPGTVVDTKI CHPNEFDFYL NSHAGIQGTS
901: RPAHYHVLLD ENGFTADQLQ MLTNNLCYTY ARCTKSVSIV PPAYYAHLAA FRARYYMESE MSDGGSSRSR SSTTGVGQVI SQLPAIKDNV KEVMFYC

Arabidopsis Description

AGO5Protein argonaute 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.