Factsheet for TraesCS3B01G287600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G446000.1	Wheat	cytosol	87.2	93.05
TraesCS5B01G454200.1	Wheat	cytosol	66.78	89.63
EER90726	Sorghum	cytosol	79.14	84.45
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	41.5	82.28
TraesCS5B01G452500.1	Wheat	nucleus	81.46	80.92
TraesCS5B01G451400.2	Wheat	plastid	89.85	76.79
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	89.18	76.73
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	82.34	75.74
Os03t0800200-01	Rice	plasma membrane	83.33	71.36
Zm00001d032611_P002	Maize	vacuole	28.7	69.89
Zm00001d013063_P001	Maize	nucleus	73.95	66.34
TraesCS3B01G027100.1	Wheat	cytosol	11.04	65.36
Zm00001d009158_P003	Maize	golgi	30.79	63.84
TraesCS4B01G026600.1	Wheat	cytosol	33.22	62.06
TraesCS5B01G468000.1	Wheat	plastid	58.28	60.48
TraesCS5B01G458100.1	Wheat	cytosol	62.8	59.89
CDX71410	Canola	nucleus	56.84	54.1
TraesCS2B01G195200.2	Wheat	nucleus	59.93	53.87
CDY04517	Canola	plastid	56.73	53.71
Bra011993.1-P	Field mustard	plastid	56.84	53.31
Zm00001d036886_P001	Maize	plastid	13.13	52.65
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	48.79	51.94
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	59.05	51.84
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	56.84	51.66
KRH25139	Soybean	plastid	54.53	51.4
KRH30536	Soybean	plastid	50.11	51.01
TraesCS7B01G256500.1	Wheat	cytosol	52.87	50.1
TraesCS4B01G024000.1	Wheat	nucleus	56.62	50.1
TraesCS6B01G466700.1	Wheat	nucleus	53.97	48.27
TraesCS6B01G206700.1	Wheat	plastid	50.22	48.0
TraesCS3B01G135800.1	Wheat	cytosol	43.82	47.21
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	52.98	46.83
Solyc06g074730.2.1	Tomato	nucleus	52.21	46.79
TraesCS7B01G482100.1	Wheat	nucleus	52.76	46.32
TraesCS2B01G421000.2	Wheat	nucleus	55.63	45.73
TraesCS6B01G270900.1	Wheat	nucleus	54.08	45.16
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	40.73	43.46
Zm00001d039440_P001	Maize	cytosol	9.93	36.89
TraesCS7B01G437900.1	Wheat	cytosol	30.02	33.71
TraesCS5B01G162300.1	Wheat	mitochondrion	32.56	32.85
TraesCS7B01G437700.1	Wheat	nucleus	31.79	32.76
TraesCS1B01G480100.1	Wheat	nucleus	31.79	31.07
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	32.23	30.93
TraesCS7B01G450300.1	Wheat	nucleus	31.24	30.79
TraesCS7B01G450200.2	Wheat	nucleus	29.58	28.94
TraesCS7B01G373400.1	Wheat	nucleus	25.06	28.88
TraesCS2B01G434000.1	Wheat	nucleus	32.56	28.1
Zm00001d035554_P001	Maize	plastid	15.45	27.83
TraesCS2B01G439000.2	Wheat	nucleus, unclear	31.35	27.15
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	24.06	27.15
TraesCS2B01G438200.1	Wheat	nucleus	25.61	21.7
Os03t0789500-01	Rice	cytosol	1.1	4.41

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3B01G287600
EnsemblPlants:TraesCS3B01G287600.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:461297394..461305752

Molecular Weight (calculated)

101746.0 Da

IEP (calculated)

8.785

GRAVY (calculated)

-0.336

Length

906 amino acids

Sequence
(BLAST)

001: MQMGQAEAEK APEVELALPA RPGAGTVGKK VMIRANHFLL NVADNNLFRY DVSINPQSKS GAVNREVLSE LIKLHGKTSL GGKLPAYDGR KSLYTAGSLP
101: FESEEFSVTL VDPEKKDKER AEREYKITIR IAGRTDLYYL QQFLKGRQMD MPQETIQMLD AVLRESPSWN YVTVSRSFFS TTFGHRGDIG EGLECWRGYY
201: QGLCPTQMGL SLNIDISATS FFKPVTVVQF VLEFLNLRDA SRPLTDMDRV KIKKALRGVR VETNHQEDKI RRYKITGITP VPTSQLIFPV DERGTRMSVV
301: QYFMQRYNYS LKYTAWPCLQ SGSDARPVYL PMEACKIVEG QRYSKKLNDK QVTNILRATC HRPQQREESI REMVLHNKYA KDRFAQEFGI NVCSDLVSVP
401: ACVLPPPMLR YHDSGKEKTC APSVGQWNMI NKKMINGGII GNWACVSFSR MRPEEVHRFC CDLIQMCNMT GMSVNPRPLV DNRSDSPNHI ENALSDVYRR
501: TTEILGNQGQ LQLLIVILPE VSGSYGKIKK VCENDLGIVS QCCLPRHAAR PNKQYMENVA LKINVKVGGR NTVMERAFAR NGIPFVSDVP TIIFGADVTP
601: PPGEDSASSI AAVVASMDWP EITKYRGLVS AQPHRQEIIE DLFSVIKDPQ RGNVNGGMIR ELLIAFRKKT GRRPERILFY RDGVSEGQFS HVLLHEMDAI
701: RKACASLEEG YMPPVTFVVV QKRHHTRLFP EVHGRCDMTD KSGNILPGTV VDLMICHPKV FDFYLCSHAG IQGTSRSSHY HVLYDENHFT ADALQSLTNN
801: LCYTYAHCTR AVSVVQPAYY AHLAAFRARY YVEGNSSDGG STPGSSGQAA IALEGPVEVH QLSKIKENVK FPLNLQPGGV LRVRTTNAGM IRGITYCLPQ
901: EDRPEA

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.