Factsheet for TraesCS3B01G027100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G026600.1	Wheat	cytosol	59.48	18.76
TraesCS3B01G287600.1	Wheat	nucleus	65.36	11.04
TraesCS5B01G468000.1	Wheat	plastid	62.09	10.88
TraesCS7B01G256500.1	Wheat	cytosol	63.4	10.15
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	64.71	10.05
TraesCS5B01G451400.2	Wheat	plastid	69.28	10.0
TraesCS6B01G206700.1	Wheat	plastid	60.13	9.7
CDY04311	Canola	cytosol, nucleus, plastid	62.09	9.69
Solyc03g098280.2.1	Tomato	nucleus	62.09	9.69
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	51.63	9.31
TraesCS6B01G466700.1	Wheat	nucleus	61.44	9.28
TraesCS3B01G135800.1	Wheat	cytosol	50.98	9.27
AT1G48410.2	Thale cress	nucleus	63.4	9.24
TraesCS2B01G195200.2	Wheat	nucleus	60.78	9.23
TraesCS7B01G482100.1	Wheat	nucleus	61.44	9.11
Solyc06g072300.2.1	Tomato	nucleus	62.75	9.11
KXG20965	Sorghum	nucleus	62.09	9.06
PGSC0003DMT400069313	Potato	cytosol	62.09	9.01
TraesCS4B01G024000.1	Wheat	nucleus	60.13	8.98
VIT_17s0053g00680.t01	Wine grape	nucleus	63.4	8.94
CDY68174	Canola	nucleus	61.44	8.94
CDY41831	Canola	nucleus	60.78	8.91
TraesCS5B01G452500.1	Wheat	nucleus	52.94	8.88
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	45.1	8.88
Bra014136.1-P	Field mustard	nucleus	61.44	8.71
TraesCS6B01G270900.1	Wheat	nucleus	61.44	8.66
CDY23683	Canola	cytosol, nucleus, plastid	61.44	8.66
TraesCS2B01G421000.2	Wheat	nucleus	62.09	8.62
Bra032254.1-P	Field mustard	nucleus	62.09	8.55
TraesCS5B01G458100.1	Wheat	cytosol	52.94	8.53
PGSC0003DMT400079716	Potato	nucleus	62.75	8.52
Zm00001d014875_P001	Maize	nucleus	58.17	8.25
TraesCS7B01G437900.1	Wheat	cytosol	41.83	7.93
TraesCS7B01G437700.1	Wheat	nucleus	41.83	7.28
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	35.29	6.72
TraesCS7B01G450300.1	Wheat	nucleus	39.22	6.53
TraesCS2B01G434000.1	Wheat	nucleus	44.44	6.48
TraesCS5B01G162300.1	Wheat	mitochondrion	37.91	6.46
TraesCS1B01G480100.1	Wheat	nucleus	38.56	6.36
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	38.56	6.25
TraesCS7B01G450200.2	Wheat	nucleus	36.6	6.05
TraesCS2B01G439000.2	Wheat	nucleus, unclear	40.52	5.93
TraesCS2B01G438200.1	Wheat	nucleus	35.29	5.05
TraesCS7B01G373400.1	Wheat	nucleus	10.46	2.04
TraesCS5B01G454200.1	Wheat	cytosol	7.19	1.63

Protein Annotations

EnsemblPlants:TraesCS3B01G027100.1	EnsemblPlantsGene:TraesCS3B01G027100	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR22891
PANTHER:PTHR22891:SF24	PFAM:PF02171	PFscan:PS50822	SMART:SM00950	SUPFAM:SSF53098	MapMan:35.1

Description

No Description!

Coordinates

chr3B:+:11695307..11696528

Molecular Weight (calculated)

17074.1 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.323

Length

153 amino acids

Sequence
(BLAST)

001: MDDAGMVFLL DAIYKPSFAR FPLREEFADS HMHHTRLFPE VHGRRDMTDK SGNILPGTVV DLMICHPIEF DFYLCSHAGI QGTSRPTHYH VLYDENHFTA
101: DALQSLTNNL CYTYARCTRA VSVDEVKGTP DETSAIATTE CPLAEKGSKS TGS

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.