Factsheet for TraesCS3B01G135800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	96.55	96.67
TraesCS3A01G116800.1	Wheat	nucleus	95.48	75.97
HORVU3Hr1G021290.1	Barley	cytosol, nucleus	86.21	68.98
Os07t0471300-01	Rice	nucleus	51.13	57.87
Zm00001d021345_P001	Maize	nucleus	61.95	56.08
EER97198	Sorghum	nucleus	65.4	52.68
Zm00001d006351_P001	Maize	nucleus	65.87	52.61
EER91156	Sorghum	nucleus	56.72	51.02
TraesCS3B01G027100.1	Wheat	cytosol	9.27	50.98
TraesCS4B01G026600.1	Wheat	cytosol	27.94	48.45
Zm00001d033206_P001	Maize	cytosol	54.22	47.2
TraesCS7B01G256500.1	Wheat	cytosol	53.51	47.07
TraesCS5B01G468000.1	Wheat	plastid	47.8	46.05
TraesCS6B01G466700.1	Wheat	nucleus	54.7	45.41
TraesCS6B01G206700.1	Wheat	plastid	51.01	45.25
TraesCS7B01G482100.1	Wheat	nucleus	54.1	44.09
TraesCS5B01G454200.1	Wheat	cytosol	35.32	44.0
TraesCS3B01G287600.1	Wheat	nucleus	47.21	43.82
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	42.93	42.52
TraesCS6B01G270900.1	Wheat	nucleus	54.46	42.21
TraesCS2B01G421000.2	Wheat	nucleus	55.29	42.2
TraesCS5B01G452500.1	Wheat	nucleus	44.71	41.23
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	46.61	39.8
TraesCS2B01G195200.2	Wheat	nucleus	47.44	39.58
TraesCS5B01G451400.2	Wheat	plastid	49.82	39.53
TraesCS4B01G024000.1	Wheat	nucleus	46.73	38.38
TraesCS7B01G437900.1	Wheat	cytosol	33.17	34.57
TraesCS7B01G437700.1	Wheat	nucleus	35.55	34.02
TraesCS5B01G162300.1	Wheat	mitochondrion	34.96	32.74
TraesCS1B01G480100.1	Wheat	nucleus	34.96	31.72
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	35.2	31.36
TraesCS7B01G373400.1	Wheat	nucleus	29.25	31.3
TraesCS5B01G458100.1	Wheat	cytosol	34.84	30.84
TraesCS7B01G450300.1	Wheat	nucleus	33.41	30.58
TraesCS7B01G450200.2	Wheat	nucleus	31.75	28.83
TraesCS2B01G434000.1	Wheat	nucleus	34.84	27.9
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	26.52	27.77
TraesCS2B01G439000.2	Wheat	nucleus, unclear	32.46	26.1
OQU89939	Sorghum	endoplasmic reticulum, plasma membrane	27.71	23.14
TraesCS2B01G438200.1	Wheat	nucleus	27.71	21.8

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF103	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3B01G135800
EnsemblPlants:TraesCS3B01G135800.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:118709255..118714142

Molecular Weight (calculated)

94138.6 Da

IEP (calculated)

9.499

GRAVY (calculated)

-0.334

Length

841 amino acids

Sequence
(BLAST)

001: MDISRAEPMF PGRPGFGRNG QVCLVRANHF FVGLVDKGLH QYDVTMSPEP TMTGVFRAVM CTLVKDHQST TLGGRLPAYD GRKSLYTAGE LPFKTKEFEV
101: TLADKNPGPP GQRRERKFKV TIKHATLVSL QQLQMLMSGI PTDIPAQALQ VLDIVLRDIV LNERDDMGFV PVGRSFFSRT IKDPIQLGQG IEGWNGFYQS
201: IRPTQSGLSL NIDMSSTAFV GGGSLIDFIA EILNRKDHLS RGIQNELDYV KIKKALRGLR VEVTHRGQMR RKYRIAGLTK DSARELRFQL STGETKTVRD
301: YFRETYKLQL RYDFLRCLQV GTEQKPNYLP IEVCNIVPGQ RYQKKLDDGQ VSKMMSIACQ HPAGRETSIR KSVLENKYNS AKRANEFGIE VDSNPTSVQA
401: RVLPAPMLRY HGTASCHPEN GAWNMRGKKV VNGAKVGIWA CVNFCNELTE DQVRIFCGKL SVMSSTTGVN FNGAKLKIFH ARSDQVEAKL REVRQQAGNM
501: KIDLVLAILP NKNGSLYGDI KRICETDIGL MSQCCLLKNV EKSSPQFLAN VALKINAKCG GRNSVFSDIQ VSLPVVWKKP TIIFGADVTH PSALDDTAPS
601: IASVVASQDW PEVTKYHGDV HAQGHRVELI EGLEGIVKKL LLSFEKQSKQ KPQQLIFYRD GVSEGQFRKV LEDEIPLIEK AWKALYSQKP AITFIVVQKR
701: HHTRLFPSDG KYQDNSGNVM PGTVVDRQIC HPTEFDFFLC SHAGIKGTSR PAHYHVLRDD NNFSADDLQS LTNNLCYTYA SCTRSVSTAP PAYYAHKLAF
801: RARFYLGQVP DMASEISAGS APPPLMLPEI KDELKSHMFY C

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.