CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033206_P001	Maize	cytosol	79.25	76.71
TraesCS3B01G135800.1	Wheat	cytosol	51.02	56.72
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	50.7	56.43
Os07t0471300-01	Rice	nucleus	40.75	51.28
EER97198	Sorghum	nucleus	54.76	49.04
TraesCS3A01G116800.1	Wheat	nucleus	53.8	47.59
HORVU3Hr1G021290.1	Barley	cytosol, nucleus	52.41	46.62
EER90726	Sorghum	cytosol	38.5	42.4
OQU91197	Sorghum	plastid	38.72	40.95
OQU91198	Sorghum	nucleus	32.51	40.92
KXG20286	Sorghum	cytosol	42.25	40.27
OQU82149	Sorghum	nucleus	44.81	38.9
OQU88608	Sorghum	plastid	36.26	38.48
KXG20965	Sorghum	nucleus	42.99	38.36
EES18841	Sorghum	nucleus	44.28	37.33
OQU86027	Sorghum	plastid	40.96	34.69
KXG23356	Sorghum	nucleus	28.56	30.31
OQU86696	Sorghum	nucleus	28.02	29.11
EES18816	Sorghum	nucleus	27.91	28.71
OQU89939	Sorghum	endoplasmic reticulum, plasma membrane	30.7	28.5
EES00570	Sorghum	nucleus	26.84	27.95
EER92100	Sorghum	cytosol	28.66	25.94
EER93271	Sorghum	cytosol	24.6	22.73
KXG27113	Sorghum	nucleus	25.45	21.79

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:Argonaute_Mid_dom
InterPro:Argonaute_N	UniProt:C5WR44	EnsemblPlants:EER91156	ProteinID:EER91156	ProteinID:EER91156.2	GO:GO:0003674
GO:GO:0003676	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015116	GO:GO:0016020	GO:GO:0031047	GO:GO:1902358	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699
PFAM:PF16486	PFAM:PF16487	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF103
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
EnsemblPlantsGene:SORBI_3001G153600	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI00081AE001	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:12347242..12352879

Molecular Weight (calculated)

104242.0 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.431

Length

935 amino acids

Sequence
(BLAST)

001: MARHRRGRGR RGGHQAYPPV DEARVSGDNG RDEANPSGAE AGNRNENRDD DPSRVGQSLP AIAADIRQAG KAVVEEAAAP LWKEFEALGI HVHRAEPVFP
101: PRPGYGAEGT PCVVRANRFL GRLVDEGLHQ YNVTISPEPT PESAYREVMT KLVSENQHTE LGGRFPAYDD RDSLFTAGAL PFDAKEFEVT LSAGGDKKMD
201: RKYKVVINHA ATISLLQLRM LLAGYPTDIP AQTLLVLDTV LRDVVSNKRN DMKCAAIATK DRTLGVDAWK GLYQSIRSTQ NCLSLIADVS SSVFVQPLLL
301: IEFVQKFLKM DVMDRNLTKP EYDKLLKVLR GVRIEVTHLG DNRRRKHRIA GLSVDPTNDL SFQSSGSGAT TTVINYFREI YGLDLKYRSL PCIIARSEQN
401: PVYLPIEVCK IVPRQCYQKK LEASQVSTLR KSACIHPEPE QSCHQIVDQE QYKRTKRAND FDTEVDDNLA TVDARVLLPP NLKYHDSGSQ KMGFPMNGYW
501: NMKDKKVING AKISNWACLN FCDDLSKKDI KEFCFKLAEM SRITGVEFAN LKLPIFTARP DQVEDGIRKC YQEAKNKLRD QKIDLLLAIL PDKNGSLYGN
601: IKRICETDIG LVSQCCRRSN VFTENSQILA NIAIKINAKA GGRNSVFDDV QKSLPVVSNK PTIIFGAHVS HPSKKKYGSA APSIASVVAS QDWHEVSKYN
701: SVVRAQGHAE EISGLEDIVR ELLHAFAKES NKKLQQLIFY RDGISEGRFK QVLEKEIPAI ENAWNALYDN EKPQITFIVV QKRHRLRLSP MDNKYKLRSV
801: TKKIIEPGTV VDSEICHPAE FDFFLCSQVD VKGPRRPVKY LVLRDDNNFT ADELQALTNN LCYTYTSGTR SVSIAPPAFY AQKLAHRALA YLAKGSDTAS
901: ASSSGSAGAD AAAPGDGPKQ LPEIKKELKG SMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.