CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G024300.1	Wheat	cytosol	58.68	79.27
TraesCS4A01G288000.1	Wheat	cytosol	68.51	70.99
Zm00001d013542_P003	Maize	nucleus	92.73	65.31
Os03t0682600-00	Rice	nucleus	65.41	65.06
OQU91197	Sorghum	plastid	75.91	63.8
TraesCS4B01G024000.1	Wheat	nucleus	80.62	58.5
EER90726	Sorghum	cytosol	66.49	58.19
HORVU4Hr1G004030.1	Barley	mitochondrion	79.41	57.12
OQU88608	Sorghum	plastid	60.83	51.31
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	23.01	47.63
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	54.24	47.36
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	63.66	45.83
CDX71410	Canola	nucleus	58.41	45.59
CDY04517	Canola	plastid	58.55	45.45
KRH25139	Soybean	plastid	58.55	45.27
Bra011993.1-P	Field mustard	plastid	58.55	45.03
KXG20286	Sorghum	cytosol	57.47	43.53
KRH30536	Soybean	plastid	52.09	43.48
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	57.74	43.03
KXG20965	Sorghum	nucleus	59.08	41.89
OQU82149	Sorghum	nucleus	59.08	40.76
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	55.99	40.59
Solyc06g074730.2.1	Tomato	nucleus	54.24	39.86
GSMUA_Achr6P04510_001	Banana	nucleus	65.01	39.05
EES18841	Sorghum	nucleus	58.28	39.04
OQU86027	Sorghum	plastid	55.18	37.14
EER93271	Sorghum	cytosol	44.55	32.71
EER97198	Sorghum	nucleus	45.9	32.66
EER91156	Sorghum	nucleus	40.92	32.51
KXG23356	Sorghum	nucleus	37.28	31.44
OQU86696	Sorghum	nucleus	37.01	30.56
EES00570	Sorghum	nucleus	35.94	29.73
EES18816	Sorghum	nucleus	36.07	29.48
EER92100	Sorghum	cytosol	39.43	28.36
KXG27113	Sorghum	nucleus	34.59	23.53
OQU89939	Sorghum	endoplasmic reticulum, plasma membrane	27.05	19.96

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	UniProt:A0A1Z5S5K8	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_Mid_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EnsemblPlants:OQU91198	ProteinID:OQU91198	ProteinID:OQU91198.1	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	EnsemblPlantsGene:SORBI_3001G136150	SUPFAM:SSF101690	SUPFAM:SSF53098
UniParc:UPI000B8BAC81	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:10757197..10763280

Molecular Weight (calculated)

83675.4 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.312

Length

743 amino acids

Sequence
(BLAST)

001: MHSLRQFLAG RQRELPQDTI QGLDIALREC PSEKYVSISR SFFSKAFGHG GDIGSGVECW RGYYQSLRAT QMGLSLNIDI SATAFYKAQP ILDFALEYLN
101: IRDTSRRLSD QDRIKLKKVL KGVRVVATHR RDIAIRYKIT GITSLPLNDL TFDQDGTRVS VVQYFKHQYN YCLKHIHWPC LQAGSDSRPT YLPMEVCNIL
201: EGQRYSRKLN ERQVTSILKM ACERPTQREG SILEVVNRNN YGNDHCAKEF GIKVTNELAL VDARVLPAPT LKYHDSGREK VCSPSIGQWN MNNKRLIDGV
301: SIKYWACVTF ASRLHPNDVR MFCNNLVGAC NDIGMQINGR PCVDVGQARP DNLEAALRNT HRQSAQILAQ QGVTSPQLDL LIVVLPDANA SFFYGRIKRL
401: CETELGIITQ CCIPKNVHKG GRQYLQNLAL KINVKVGGRN TVLEDALNRR IHLLTDLPTI IFGADVTHPA PGEDASPSIA AVVASMDWPE VSKYRCLVSS
501: QGHREEIIAD LFTQVKDPQK GLLHGGMIRE LLVSFYRANG SRKPSRIIFY RDGVSEGQFS QVLLYEVDAI RKACASLEEG YLPPVTFVVV QKRHHTRLFP
601: EDHRAQGQTD RSGNILPGTV VDTKICHPSE FDFYLCSHSG IQGTSRPTHY HVLFDENNFT ADALQTLTYK LCYTYARCTR SVSIVPPAYY AHLAAFRARH
701: YLDDGLSDQG SSSVASSRQQ DRAAPVKQLP KVMESVKQFM FYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.