Factsheet for TraesCS4A01G288000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G024300.1	Wheat	cytosol	71.27	92.91
TraesCS4B01G024000.1	Wheat	nucleus	97.91	68.55
OQU91198	Sorghum	nucleus	70.99	68.51
HORVU4Hr1G004030.1	Barley	mitochondrion	93.03	64.57
Os03t0682600-00	Rice	nucleus	64.16	61.58
TraesCS4A01G288300.1	Wheat	plastid	71.83	60.09
Zm00001d013542_P003	Maize	nucleus	77.41	52.61
TraesCS5A01G446000.1	Wheat	cytosol	61.65	52.06
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	22.04	44.01
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	50.91	42.89
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	60.39	41.96
KRH25139	Soybean	plastid	55.51	41.42
CDX71410	Canola	nucleus	54.95	41.39
TraesCS7A01G371200.2	Wheat	cytosol	55.23	41.16
CDY04517	Canola	plastid	54.81	41.07
TraesCS2A01G258200.1	Wheat	cytosol	38.08	40.99
Bra011993.1-P	Field mustard	plastid	54.81	40.68
TraesCS2A01G168900.1	Wheat	cytosol	57.74	39.92
TraesCS7A01G557400.1	Wheat	plastid	57.32	39.83
TraesCS6A01G178100.2	Wheat	plastid	52.3	39.56
KRH30536	Soybean	plastid	49.09	39.55
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	54.81	39.42
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	55.09	38.54
Solyc06g074730.2.1	Tomato	nucleus	53.97	38.28
TraesCS6A01G254600.2	Wheat	plastid	57.18	37.79
TraesCS2A01G403100.4	Wheat	nucleus	58.58	37.5
GSMUA_Achr6P04510_001	Banana	nucleus	62.06	35.97
TraesCS2A01G258100.1	Wheat	mitochondrion	42.4	34.7
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	58.44	34.63
TraesCS7A01G067500.2	Wheat	cytosol	41.0	34.43
TraesCS3A01G116800.1	Wheat	nucleus	45.47	30.84
TraesCS7A01G521000.1	Wheat	nucleus	34.73	30.7
TraesCS2A01G414800.1	Wheat	nucleus	37.66	28.91
TraesCS5A01G165900.1	Wheat	cytosol	35.15	28.54
TraesCS3A01G188400.1	Wheat	nucleus	35.01	27.4
TraesCS7A01G533100.1	Wheat	cytosol	34.31	27.3
TraesCS1A01G445500.1	Wheat	golgi, unclear	34.73	26.92
TraesCS2A01G419800.2	Wheat	nucleus	25.52	25.96
TraesCS2A01G419900.1	Wheat	nucleus	33.33	22.78
TraesCS2A01G419500.1	Wheat	nucleus	28.87	19.44

Protein Annotations

Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003165
InterPro:IPR036397	InterPro:PAZ_dom_sf	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS4A01G288000
EnsemblPlants:TraesCS4A01G288000.1	TIGR:cd04657	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:593194498..593201017

Molecular Weight (calculated)

80541.6 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.348

Length

717 amino acids

Sequence
(BLAST)

001: MARERNRSII NELVRLHKQH LDGRLPVYDG RKGMFTAAPL PFKTKEFIVK VSNTERGYQG EKEYKVTIKE VAKLNLYNLQ QSLAGRQREL PQDTIQALDI
101: ALRETPTAKY TPISRSFFSK SFGHGGDIGS GVECWRGYYQ SLRPTQMGLS LNIDISATAF YKAQPVMDFA LEYLNIRGDA PRRLFDQDRL KVCNILGGQR
201: YSRKLNERQV TNILRLACER PDKREGSIVE VINRNNYGID DNAKEFGIKV MNQLALVDAR VLPPPRLKYH QSGREQICNP SVGQWNMNNK RMINGGSIRH
301: WACVSFGSRL QWNDVSVFCN YLVGTCNNMG MQVSETPCVD IVQARQGNLE AVKNIYRQSA QVLAQQGLEG QNLELLFVVL PDGPNASDCY GRVKRLCEIV
401: LGLITQCCLP KHVQRAGTQY LQNMALKINV KVGGRNTVLE NALLRGIPLL TDKPTIIFGA DVTHPSPGED MSPSIAAVVA SMDWPEVSKY TCLVSSQGHR
501: EEIIADLFTE VKDPQKGVIY GGMIRDGVSE GQFSQVLLYE MDAIYRACSS LENGYLPQVT FVVVQKRHHT GLFPEDHRSG AMADRSGNIL PGTVVDTKIC
601: HPSEFDFYLC SHAGIQGTSR PTHYHVLYDD NNFTADALQT LTYNLCYTYA RCTRSVSIVP PAYYAHLAAF RARHYLDDNH SDHGSSSVGG TRMNDHSVPV
701: KPLPKVKESV RQFMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.