Factsheet for TraesCS7A01G533100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G450200.2	Wheat	nucleus	90.23	87.8
TraesCS1A01G445500.1	Wheat	golgi, unclear	79.69	77.62
Os04t0151800-02	Rice	nucleus	77.25	76.4
EES18816	Sorghum	nucleus	74.47	73.82
Zm00001d039214_P025	Maize	nucleus	73.36	71.54
PGSC0003DMT400070806	Potato	nucleus	22.64	69.86
TraesCS3A01G188400.1	Wheat	nucleus	70.14	69.0
GSMUA_Achr9P05150_001	Banana	nucleus	66.59	65.57
VIT_06s0009g01200.t01	Wine grape	nucleus	65.26	64.4
CDY72062	Canola	plastid	21.2	64.31
PGSC0003DMT400069459	Potato	nucleus	65.04	64.18
Solyc01g008960.2.1	Tomato	nucleus	64.59	64.03
Solyc06g073540.2.1	Tomato	nucleus	64.71	63.86
PGSC0003DMT400058471	Potato	nucleus	64.37	63.81
KRH73469	Soybean	nucleus	63.6	63.24
KRH14678	Soybean	nucleus	63.48	63.13
PGSC0003DMT400039204	Potato	cytosol	10.32	62.0
Solyc01g096750.1.1	Tomato	nucleus	60.6	61.98
KRG89867	Soybean	nucleus	64.93	61.77
Solyc06g073530.1.1	Tomato	nucleus	61.04	60.84
VIT_08s0040g00070.t01	Wine grape	nucleus	61.71	60.57
CDY48192	Canola	nucleus	61.6	60.2
Bra034318.1-P	Field mustard	nucleus	61.49	60.09
CDY56413	Canola	nucleus	61.49	60.02
AT2G27040.1	Thale cress	nucleus	61.49	59.96
CDX77061	Canola	nucleus	61.27	59.87
CDY04475	Canola	nucleus	61.27	59.8
AT5G21150.1	Thale cress	nucleus	59.38	59.71
CDX92417	Canola	nucleus	41.95	58.7
Bra002361.1-P	Field mustard	nucleus	58.93	58.29
CDY09103	Canola	nucleus	58.49	58.17
Bra020152.1-P	Field mustard	nucleus	58.49	58.17
VIT_13s0175g00140.t01	Wine grape	nucleus	56.94	57.97
CDX92406	Canola	nucleus	57.6	57.41
CDX92405	Canola	nucleus	58.27	57.38
TraesCS7A01G521000.1	Wheat	nucleus	51.5	57.21
CDY16587	Canola	nucleus	55.49	56.69
CDY59516	Canola	nucleus	56.83	56.51
TraesCS5A01G165900.1	Wheat	cytosol	54.61	55.72
AT5G21030.2	Thale cress	cytosol	52.72	55.62
Bra002360.1-P	Field mustard	nucleus	57.16	55.38
CDY16595	Canola	nucleus	51.39	50.33
KRH56276	Soybean	cytosol	46.17	50.06
Solyc03g111760.2.1	Tomato	mitochondrion	48.28	47.49
CDY62055	Canola	nucleus	24.75	38.72
TraesCS2A01G258200.1	Wheat	cytosol	27.08	36.64
TraesCS4A01G288000.1	Wheat	cytosol	27.3	34.31
TraesCS5A01G446000.1	Wheat	cytosol	32.3	34.28
TraesCS4A01G288300.1	Wheat	plastid	32.3	33.96
TraesCS7A01G371200.2	Wheat	cytosol	35.07	32.85
TraesCS6A01G178100.2	Wheat	plastid	34.3	32.59
TraesCS2A01G258100.1	Wheat	mitochondrion	31.41	32.31
TraesCS7A01G557400.1	Wheat	plastid	35.52	31.01
TraesCS7A01G067500.2	Wheat	cytosol	29.3	30.91
TraesCS6A01G254600.2	Wheat	plastid	35.41	29.4
Bra002349.1-P	Field mustard	nucleus	54.16	28.69
TraesCS2A01G403100.4	Wheat	nucleus	35.63	28.66
TraesCS2A01G168900.1	Wheat	cytosol	32.85	28.54
TraesCS3A01G116800.1	Wheat	nucleus	32.96	28.1
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	35.85	26.69
TraesCS2A01G414800.1	Wheat	nucleus	26.97	26.02
TraesCS2A01G419800.2	Wheat	nucleus	20.2	25.82
TraesCS2A01G419900.1	Wheat	nucleus	27.64	23.74
TraesCS2A01G419500.1	Wheat	nucleus	23.53	19.91

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7A01G533100
EnsemblPlants:TraesCS7A01G533100.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:-:711652755..711657579

Molecular Weight (calculated)

101597.0 Da

IEP (calculated)

9.224

GRAVY (calculated)

-0.371

Length

901 amino acids

Sequence
(BLAST)

001: MDLSDGGPEE LPPPPPLPPD VVPIRAEEDV AEELPRNKPA KPKRLPKARP GLGKRGQTIQ LLANHYKVSM RSSEDFFHHY HVNLKYEDDQ PVVRKGIGRK
101: VLDKLQHMYR SELANNEFAY DGEKSLFTIG ALPQVHNEFT VVLEDIRSGK CSGGNSGSSP GGSDTKRVKR PYKTKIFKVE LCFVAKIPTA AITQALRGQE
201: SENSLEALRV LDIILRQHSA KQGCLLLHQS FFHNNPRNFV DLKGGVVGCR GFHSSFRGTQ SGLSLNIDVS TTMLVKPGPV IDFLLANQMV DHPNRIDWSK
301: AKRALKNLRI KTTHANSEFK IFGLSEKKCN EQTFLLRRKD GDNGDINTVE ITVHEYFVHN RGIELRYSYL PCINAGRRNR PTYFPVELCE LVPLQRYTKD
401: LSTLQRSSLV EKSRQMPHER MSILNNALKR TNYDSDPMVK ACGISIARHF TQIEGRVLPA PKLKAGNGEE FFPRNGRWNL SKKKLIRTCS VNKWAVVNFS
501: AECDVHGLVR DLKRIATEMG IKIEYPYCDV IEESPSARRA PASRRVDEMF AKINSNPPGD PKFLLSLLPV RKNCEIYGPW KRKCLVECGI FTQCLAPPRK
601: VNDQYLINVL LKINAKLGGL NTLLQCELSP APAVLSIVGK LPTIILGMYV SHGQPGQSDR PSTAAVVNSR EWPLISKYRA TVHTQSPKLE MMSSLFKPWG
701: KDDGLIRESL IDFYTSSGNR KPEQIIIFRD GVSESQFTQV INIELEQIIE ACKFLDETWE PKFTVIVAQK NHHTRFFQTE SPNNVPPGTV VDKEVCHPKN
801: FDFYMCAHAG MIGTSRPTHY HVLHDEIGFT ADELQEFVHS LSYVYQRSTT AILVVAPIMY AHLAAAQVGT FVKFEDMSAG SIPVPELPRL HENVRSSMFF
901: C

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.