Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G325500.1 | Wheat | nucleus | 76.83 | 86.52 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 81.35 | 82.61 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 73.14 | 72.04 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.33 | 54.84 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.41 | 48.26 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.58 | 45.57 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 16.68 | 42.19 |
| Zm00001d038644_P004 | Maize | nucleus | 42.2 | 41.21 |
| Zm00001d010719_P002 | Maize | nucleus | 40.36 | 39.82 |
| OQU78267 | Sorghum | nucleus | 40.17 | 39.66 |
| Os05t0506200-01 | Rice | nucleus | 13.94 | 37.37 |
| CDY41384 | Canola | nucleus | 15.79 | 32.85 |
| CDX70245 | Canola | nucleus | 20.43 | 28.46 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.33 | 27.09 |
| KRH35991 | Soybean | nucleus | 23.3 | 25.21 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 16.23 | 24.26 |
| KRG90770 | Soybean | nucleus | 22.72 | 23.88 |
| AT5G04290.1 | Thale cress | nucleus | 22.22 | 23.38 |
| Bra009470.1-P | Field mustard | nucleus | 22.79 | 23.2 |
| Solyc11g008150.1.1 | Tomato | nucleus | 22.15 | 23.06 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 14.83 | 22.47 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom_sf | PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 |
| SMART:SM00739 | InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS1B01G337800 | EnsemblPlants:TraesCS1B01G337800.2 | TIGR:cd06081 | TIGR:cd06084 |
| TIGR:cd09888 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:565660131..565672842
Molecular Weight (calculated)
166911.0 Da
IEP (calculated)
5.160
GRAVY (calculated)
-1.041
Length
1571 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVKGKGKQI ATDDPGSSSG SKRRGAGRGG AGPSSSSAKR RRGRSGVLQF VDDAAGVDDE YEEDEEEEEE EEAEELQDDL DDGFFTAGRT KGVRVERSHP
0101: LPFLGNVKEE ELSGDELEQF INDRYSNRVR YAGYGGSTEQ YDDDESTMDG VKDPIIWRVK CMIGRERQMA FCFMQKFLHL QKFGTKVPII SAFSLDHVRG
0201: SVFVEAEKAC DVTEACKGFC DVYVNRTSPV PVAEVRSLLS TRAKPFEVSP GTWVRMKSGN YKGDLAQVVG ADDGRKKVLI KLIPRVDLHA ISKKFGGGIP
0301: LKGAAVPAPR LISSQELEFF GPHIESKRDR QTGDVFEVLD GLMFKDGFLY KRVALSSLIY WGIQPTDTEI LKFSSSPSIK SSADDMDWVS GIYGHNKKRN
0401: VPRESDMKKP ASSKGKSSKA SNLKGSTSTE NCDDDEDDAQ FNLHDLVTFG RKDFGVIIAV EKDGFKILKG GPEGSAVTVR KQDIKKGVVD KMFTAVDHQN
0501: KSISMNDTVK VLEGPVQGKQ GVVKHLYMGI LFIYDESESE NNGFFCAQCG SCENVKKRRD VTNSEDNPIP MFSDSAFISS EQNEQRNNER PYRAPREQLF
0601: QIGEMLRFRR GPLKGYLCRV VRIFRNDVTV KLDSLLKIVT VQAEFLSVPT KRGDNSSNAP SGNFGTQDTP FTEAAKTSWD NGFTSLGSDS WQPFSSSALP
0701: AQNADGETEA DPWSKKPISS ADGDSDPWGN KTTSAAVDIW NNSTTQKESS TDNAWGKEAG GGGFDAGGSS WGGGAVKDSE KSGNWGEACN QVDTATGGDT
0801: DPWGSKVKEV VTKEADSWEK SSWSPEKKLE GDGQGWGQPF GKSNQDQEKG TVPKDADKGG SWDTTVAICV GSDDNDAWAK SATLPVVQDD AWGKSKESGQ
0901: NSGSGGWDTV AVGQGQDEAW GNPKDSGAKS EETNNGSGNW NKAGSSDQVG GSDWGKPKFF GGAGSSSWNK GEAAEGDNQN STWSRPSGNF EGGRGFGRGR
1001: GRGRGRESWD SGDRNDQESR KGSWHNDSSA KPSWGSDTQV GNEGGDSGGY RGRGRGRGQY GGRGGGRDNG WRNGDRGSSE FGKERSSDTL NWGNSQPWSA
1101: NEGTKPCDEN QTPTWNSSED KKLSGGEQGD PWASKVTAKG QEQQTDAWSS KAAGAENNDG WNTKAKESSC NTGAKWEDAA SGEKQQGDPW SNKTSSTTKG
1201: KEQETDPWAS KVSSTAAEEK ADPWSTKGGN GNDGGWNNAG SSSWGKPSSS SGDQEPAWNK PKYGDDNAGY GRGGFGRGNR GRGRGRFGDS GSSWNGGGNT
1301: NDGSGGGRSE DQWNSRDSDG GRGRGRGRFG RGDRNQGNNF GSGDGDGVSW GSGRGNRGRG GGYRNNGNDN NEGRASSQDR GGGWSHSSAW NADKKGSTEG
1401: DQSFSKGKSS WGSDNNDSWG APKPSGGDDQ AGKKDGNNSW SQNKPSSGDG SSILGQWAAP AGGTTAGRGA SGNGSSILGQ WGAPPGNTTA GTGGSAGEGG
1501: GSWGKSNEDS WNSSKGTGGS EGGSKKEGSW DKAEGSGSQG GGGGSSWDKA ASGGWDSNKG GDAGNGGGSG W
0101: LPFLGNVKEE ELSGDELEQF INDRYSNRVR YAGYGGSTEQ YDDDESTMDG VKDPIIWRVK CMIGRERQMA FCFMQKFLHL QKFGTKVPII SAFSLDHVRG
0201: SVFVEAEKAC DVTEACKGFC DVYVNRTSPV PVAEVRSLLS TRAKPFEVSP GTWVRMKSGN YKGDLAQVVG ADDGRKKVLI KLIPRVDLHA ISKKFGGGIP
0301: LKGAAVPAPR LISSQELEFF GPHIESKRDR QTGDVFEVLD GLMFKDGFLY KRVALSSLIY WGIQPTDTEI LKFSSSPSIK SSADDMDWVS GIYGHNKKRN
0401: VPRESDMKKP ASSKGKSSKA SNLKGSTSTE NCDDDEDDAQ FNLHDLVTFG RKDFGVIIAV EKDGFKILKG GPEGSAVTVR KQDIKKGVVD KMFTAVDHQN
0501: KSISMNDTVK VLEGPVQGKQ GVVKHLYMGI LFIYDESESE NNGFFCAQCG SCENVKKRRD VTNSEDNPIP MFSDSAFISS EQNEQRNNER PYRAPREQLF
0601: QIGEMLRFRR GPLKGYLCRV VRIFRNDVTV KLDSLLKIVT VQAEFLSVPT KRGDNSSNAP SGNFGTQDTP FTEAAKTSWD NGFTSLGSDS WQPFSSSALP
0701: AQNADGETEA DPWSKKPISS ADGDSDPWGN KTTSAAVDIW NNSTTQKESS TDNAWGKEAG GGGFDAGGSS WGGGAVKDSE KSGNWGEACN QVDTATGGDT
0801: DPWGSKVKEV VTKEADSWEK SSWSPEKKLE GDGQGWGQPF GKSNQDQEKG TVPKDADKGG SWDTTVAICV GSDDNDAWAK SATLPVVQDD AWGKSKESGQ
0901: NSGSGGWDTV AVGQGQDEAW GNPKDSGAKS EETNNGSGNW NKAGSSDQVG GSDWGKPKFF GGAGSSSWNK GEAAEGDNQN STWSRPSGNF EGGRGFGRGR
1001: GRGRGRESWD SGDRNDQESR KGSWHNDSSA KPSWGSDTQV GNEGGDSGGY RGRGRGRGQY GGRGGGRDNG WRNGDRGSSE FGKERSSDTL NWGNSQPWSA
1101: NEGTKPCDEN QTPTWNSSED KKLSGGEQGD PWASKVTAKG QEQQTDAWSS KAAGAENNDG WNTKAKESSC NTGAKWEDAA SGEKQQGDPW SNKTSSTTKG
1201: KEQETDPWAS KVSSTAAEEK ADPWSTKGGN GNDGGWNNAG SSSWGKPSSS SGDQEPAWNK PKYGDDNAGY GRGGFGRGNR GRGRGRFGDS GSSWNGGGNT
1301: NDGSGGGRSE DQWNSRDSDG GRGRGRGRFG RGDRNQGNNF GSGDGDGVSW GSGRGNRGRG GGYRNNGNDN NEGRASSQDR GGGWSHSSAW NADKKGSTEG
1401: DQSFSKGKSS WGSDNNDSWG APKPSGGDDQ AGKKDGNNSW SQNKPSSGDG SSILGQWAAP AGGTTAGRGA SGNGSSILGQ WGAPPGNTTA GTGGSAGEGG
1501: GSWGKSNEDS WNSSKGTGGS EGGSKKEGSW DKAEGSGSQG GGGGSSWDKA ASGGWDSNKG GDAGNGGGSG W
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.