Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | KRG89867 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | KRH14678 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | KRH73469 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 5.65 | 66.13 |
| KRG90770 | Soybean | nucleus | 60.47 | 58.73 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 24.52 | 57.33 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 6.06 | 55.7 |
| CDY41384 | Canola | nucleus | 21.69 | 41.72 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 17.49 | 40.19 |
| CDX70245 | Canola | nucleus | 27.48 | 35.37 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.82 | 27.89 |
| Solyc11g008150.1.1 | Tomato | nucleus | 28.58 | 27.5 |
| AT5G04290.1 | Thale cress | nucleus | 28.17 | 27.39 |
| Bra009470.1-P | Field mustard | nucleus | 29.06 | 27.35 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 23.55 | 24.52 |
| Zm00001d010719_P002 | Maize | nucleus | 26.45 | 24.12 |
| KRH53382 | Soybean | nucleus | 17.08 | 23.87 |
| OQU78267 | Sorghum | nucleus | 25.96 | 23.7 |
| Zm00001d038644_P004 | Maize | nucleus | 26.24 | 23.68 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 25.21 | 23.66 |
| KRH64551 | Soybean | nucleus | 17.01 | 23.52 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 25.21 | 23.3 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 24.93 | 22.7 |
| Os05t0506200-01 | Rice | nucleus | 8.75 | 21.67 |
| KRG90810 | Soybean | mitochondrion | 7.44 | 12.05 |
Protein Annotations
| EntrezGene:100787703 | MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EMBL:ACUP02006715 | EnsemblPlantsGene:GLYMA_10G276900 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006368 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032044 | UniProt:I1LEZ4 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | EnsemblPlants:KRH35991 | ProteinID:KRH35991 | ProteinID:KRH35991.1 | InterPro:NGN_dom_sf | PFAM:PF03439 |
| ScanProsite:PS01108 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00739 |
| SUPFAM:SSF50104 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00029519A6 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:+:49922223..49930810
Molecular Weight (calculated)
154835.0 Da
IEP (calculated)
6.756
GRAVY (calculated)
-1.042
Length
1452 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTNKGKGKGK EVAGKGSAGK RKAVFYDDKT GVGRKRNKPG VLQFFDDAAD VEESDFSDFS DDDSDFDFSD DELNAGPRRM DMPDNGQSSL PRVVPKEEMV
0101: DEEEWDRILE ERYKDPSRFI RFADEFGDDK GMDPSSIHEG VDELMPYIWK VKCTVGRERL SALCLMQKFA DLDSLGTKLK IKSAFAVDHM KGFVYIEAEK
0201: QYDINEACQG IPGIYVTRVA PVPNSEVYHL FSVRSRTPEI SEGMWARIKG GNYKGDLAQV VSVNNTRKKV TVKLIPRIDL QALAAKFGGG YSRQKMAVPA
0301: PRLISSSELE EFRPLIQIKR DRDTGKVFEV LDGLMLKDGY VYKKVSLDSL SLWGVVPTEE ELLKFGPCEN NESNDLEWLS QLYGDKKKKR VIRPDKGGGG
0401: KGESSSGSGV GNGFELYDLV CFGKKDFGVI VGMDKDDIYK ILKEGSDGPA AVTIERHEIK SGLFDLKLTA LDQQSKTILV NDTVRVLEGP SKGKQGIVKH
0501: IYRGIVFLYD GNEEENGGYL TCKSNMCEKV KVAVGDCSGK DSEPAPLVFE DQPSSPRSPL SPKKPWQARE NNREFNRGDN NNMFSIGQTL RIRIGPLKGY
0601: ICRVIALRRA DVTVKLDSQQ KVLTVKCEHL SEVQGKSTAI SSSGDPDSSS SKPFDLLGTE GSSGGWLNGV GTSTGGGGWN AGRASSTGGG GWNAGGASSN
0701: GGGGWNAGGS SSTGGGGWNA GGGSSTRGGG WNAGGASSER DAESNHSAPS LLNTESISNP FSSKGAEDSA WETKSNSNQN SSWGVAVEKT GIASNPDQSD
0801: GWGSGGSWGQ AEHKTGSMGD GNQNSNWNDK PNNLNGNQSS GRDSKSNWNT TKASEGESSG WNSVKKSNQT SSIGWGGGNG FKSGVKEVGN PDGTSDIDAN
0901: QDVGWKSQPT KDGSGSSGWG TKNNWNAPVS SSHDKQGKGN DQGGWNAGKA SGGSAADFCQ ASGWKGGLSE NAQEGSNWGI KKFGSGTVSG DSGGNLGNDW
1001: GPKSNWNSGS RSGNENQNSH WSSGHTEPRN QDSNLDKKNN WISVNGANLA SDPKSSKWNS GSGNSNENSN WGNNGNNKSS WGAGNENKNS NWSSGRNGPE
1101: DQESNQGKKS NWNSGDSDNQ ASDPNNSNWN SNKSSWSAGN ENRNSNWSSG DPGNKDSNWG KKSNWNSGSG DANQNTTWGS NSSWSTANAS SDAGVNEGSN
1201: ENSDGVGGGN WRGGYQGRGS SDRGGFRGRG FRGRGERGGF GGRAERGGGF GGRWERGGGF GGRGRSDREG CGGRWGSEGG RGGRGRGRND QSGGWNNRRD
1301: SGEDGPSDWK KGAENGGWKN GNGSQAWNQD TGDKDRQSWS QGNADKERPS WNQGSGSNQS WSSASAGAND NWNNNGSTQT AEASWKKSTT TEETNIQDSG
1401: WNKGSSSNTT SRGWGQSSAA DKGQASSWKE SAIDDAAGSW GKKNDRGDKG GW
0101: DEEEWDRILE ERYKDPSRFI RFADEFGDDK GMDPSSIHEG VDELMPYIWK VKCTVGRERL SALCLMQKFA DLDSLGTKLK IKSAFAVDHM KGFVYIEAEK
0201: QYDINEACQG IPGIYVTRVA PVPNSEVYHL FSVRSRTPEI SEGMWARIKG GNYKGDLAQV VSVNNTRKKV TVKLIPRIDL QALAAKFGGG YSRQKMAVPA
0301: PRLISSSELE EFRPLIQIKR DRDTGKVFEV LDGLMLKDGY VYKKVSLDSL SLWGVVPTEE ELLKFGPCEN NESNDLEWLS QLYGDKKKKR VIRPDKGGGG
0401: KGESSSGSGV GNGFELYDLV CFGKKDFGVI VGMDKDDIYK ILKEGSDGPA AVTIERHEIK SGLFDLKLTA LDQQSKTILV NDTVRVLEGP SKGKQGIVKH
0501: IYRGIVFLYD GNEEENGGYL TCKSNMCEKV KVAVGDCSGK DSEPAPLVFE DQPSSPRSPL SPKKPWQARE NNREFNRGDN NNMFSIGQTL RIRIGPLKGY
0601: ICRVIALRRA DVTVKLDSQQ KVLTVKCEHL SEVQGKSTAI SSSGDPDSSS SKPFDLLGTE GSSGGWLNGV GTSTGGGGWN AGRASSTGGG GWNAGGASSN
0701: GGGGWNAGGS SSTGGGGWNA GGGSSTRGGG WNAGGASSER DAESNHSAPS LLNTESISNP FSSKGAEDSA WETKSNSNQN SSWGVAVEKT GIASNPDQSD
0801: GWGSGGSWGQ AEHKTGSMGD GNQNSNWNDK PNNLNGNQSS GRDSKSNWNT TKASEGESSG WNSVKKSNQT SSIGWGGGNG FKSGVKEVGN PDGTSDIDAN
0901: QDVGWKSQPT KDGSGSSGWG TKNNWNAPVS SSHDKQGKGN DQGGWNAGKA SGGSAADFCQ ASGWKGGLSE NAQEGSNWGI KKFGSGTVSG DSGGNLGNDW
1001: GPKSNWNSGS RSGNENQNSH WSSGHTEPRN QDSNLDKKNN WISVNGANLA SDPKSSKWNS GSGNSNENSN WGNNGNNKSS WGAGNENKNS NWSSGRNGPE
1101: DQESNQGKKS NWNSGDSDNQ ASDPNNSNWN SNKSSWSAGN ENRNSNWSSG DPGNKDSNWG KKSNWNSGSG DANQNTTWGS NSSWSTANAS SDAGVNEGSN
1201: ENSDGVGGGN WRGGYQGRGS SDRGGFRGRG FRGRGERGGF GGRAERGGGF GGRWERGGGF GGRGRSDREG CGGRWGSEGG RGGRGRGRND QSGGWNNRRD
1301: SGEDGPSDWK KGAENGGWKN GNGSQAWNQD TGDKDRQSWS QGNADKERPS WNQGSGSNQS WSSASAGAND NWNNNGSTQT AEASWKKSTT TEETNIQDSG
1401: WNKGSSSNTT SRGWGQSSAA DKGQASSWKE SAIDDAAGSW GKKNDRGDKG GW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.