Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra034318.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | Bra034318.1-P | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70245 | Canola | nucleus | 47.83 | 65.43 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.54 | 56.45 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 5.44 | 53.16 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 20.35 | 50.56 |
| AT5G04290.1 | Thale cress | nucleus | 37.2 | 38.45 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 15.23 | 37.18 |
| Bra037858.1-P | Field mustard | cytosol | 1.88 | 34.94 |
| KRH35991 | Soybean | nucleus | 27.35 | 29.06 |
| KRG90770 | Soybean | nucleus | 27.41 | 28.29 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.6 | 28.29 |
| Solyc11g008150.1.1 | Tomato | nucleus | 26.96 | 27.57 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 21.65 | 23.94 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 23.46 | 23.4 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 24.04 | 23.26 |
| Os05t0506200-01 | Rice | nucleus | 8.75 | 23.04 |
| Bra000641.1-P | Field mustard | cytosol | 15.42 | 22.86 |
| OQU78267 | Sorghum | nucleus | 23.53 | 22.82 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 23.2 | 22.79 |
| Bra037857.1-P | Field mustard | cytosol | 3.69 | 22.71 |
| Zm00001d038644_P004 | Maize | nucleus | 23.46 | 22.5 |
| Bra022968.1-P | Field mustard | nucleus | 14.26 | 21.57 |
| Zm00001d010719_P002 | Maize | nucleus | 22.16 | 21.48 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EnsemblPlantsGene:Bra009470 | EnsemblPlants:Bra009470.1 | EnsemblPlants:Bra009470.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003682 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006306 | GO:GO:0006342 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016458 | GO:GO:0030422 | GO:GO:0040029 | GO:GO:0080188 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | UniProt:M4CZ23 | InterPro:NGN_dom | InterPro:NGN_dom_sf |
| PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00738 | SMART:SM00739 |
| InterPro:TF_Spt5_NGN-domain | UniParc:UPI0002547971 | SEG:seg | : | : | : |
Description
AT5G04290 (E=0.0) KTF1 | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding
Coordinates
chrA10:-:16818242..16824899
Molecular Weight (calculated)
161109.0 Da
IEP (calculated)
6.563
GRAVY (calculated)
-1.074
Length
1543 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDRKGKGKQI AGAGSSSGKK RKGGGGVEFR DEGLRINSKR KKPGVLQFFE ESAEVGYYGG SSDEECDMDD LFNDMEDEPE VETSGKDDKG GKGKGSSSFV
0101: FPKEEEMNED DYDRMMEERY KPGSGFVRYA ADDVKSSIEM DALVPTAHDP PIWKIKCAIG REKHSVFCLM HKFVELRKIG TKLKILSVFF VEHVKGFIFI
0201: EADKEQDVLE ACMSLNGIYA TRMMLLPKSE APHLLTVQRK TKTFSEGTWA RIKSGKYKGD LAQVVAVSDT RGKALIKLIP RIDIAALTQK YGGGVAVQKG
0301: LNPAPRLISS SELEEFRPII QVRRDRDTGM TFEHLDSLML KDGFLYKKVS LDSLTSCGVK PSKEEILKFA PLEEKETGDV EWISEIYGEE KKKKSIPAGK
0401: GVEKGEGSGG GKGEGSGGGK GEGSSESKSE SSHELYNLVC FSRKDFGLIV GVDDKGDGYK VLKEGSDGPV VVSVGKKEMQ EPFDSKFSAL DLNNKQISIG
0501: DVVKIAKGPS EGKQGVVRQV YRGIIFLYAE GEEENGGYLC CKSQSCEKVK LFTEESNDKT GGFDASAFGD SASSPKSPLS PEKEWQQQPK EKYINSNQGD
0601: KGSMYSIGQK LRIRVGPLKG YLCRVIALRY SDITVKLDSQ HKIFTVKSEH LAEVRDRNTV PSMSGDAGMG SFQQFDMLGT EGNNGDWAKG AGTSEDNTST
0701: WGSTAAENKP DSAGDQSGGW NAWGKPPAPE ASTVGAWGDA STPKVEASWG KQGASTSNVE DSGSWGKHGG SSDGNKQNDD SVWGKLVEES SQKKEESSWG
0801: KKTGSDSDLG KGNGESTWGN KDGNSSASNK EGVSWGQHDK GSDGDQGGSS WGKKNDSVKD DGGSSWGKKD DGGSTWGKKD DGGSSWGKKV DDVIKDDGGS
0901: SWDKKVEGNK DDGGSSWGKK VDCNKDDGGS SWGKKVEGNK DDGGSSWGKK VDCNKDDGGS SWGKKDDGGP SWNKKDDGNK DDGGSAWGKK VESGSSWRNK
1001: DGGSSWGNKD GGSSWAKKDD GGYSEQTFDR GGRGFGGRRG GGRRGGRDQF GRGRSFGHSE DQAPWSKPGG GGGSSWGKQD SGGGGSSWGK DNDAGGGSSW
1101: GKQNNAGGGG GSSWSKDNDA GGGSSWGKQN NAGGGGSSWG QEKDAGGGSS LGKQGSDGGG SSWGKKNDTG GGGSSWGQDN NAGGGSSWGK QASDGGGSSW
1201: GKKNDAGGGG GSSWGKDNDA GGGSSWGKQG SDGGGSSWGK KNDAGGGGSS WGKQGSDGGG SSWGKKSDGG GGGSSWGQEN NAGGGSSWGK QGSDGGGSSW
1301: GKKNDAGGGG GSSWGQQGGG GSAWANKQNN DGGGGQSWSK QDDGGSKPWG EQSGGRGFGG RRGGGFRGGF RGGRNQLGRD GGGRSFESSG WKRDNQENTT
1401: WKSNNQSGGS DWKKSWGEDS NTAKPSDSSS AGGNWGSWDA NSKKETNAGG GWGANSKNET STGGDWGSNS KKETNAVDGD KPSNENKAAA AWGTPANDQE
1501: NAGNNNDGWG KKPSDDVKTS GAADNAWGGK TNAGASSSSG SAW
0101: FPKEEEMNED DYDRMMEERY KPGSGFVRYA ADDVKSSIEM DALVPTAHDP PIWKIKCAIG REKHSVFCLM HKFVELRKIG TKLKILSVFF VEHVKGFIFI
0201: EADKEQDVLE ACMSLNGIYA TRMMLLPKSE APHLLTVQRK TKTFSEGTWA RIKSGKYKGD LAQVVAVSDT RGKALIKLIP RIDIAALTQK YGGGVAVQKG
0301: LNPAPRLISS SELEEFRPII QVRRDRDTGM TFEHLDSLML KDGFLYKKVS LDSLTSCGVK PSKEEILKFA PLEEKETGDV EWISEIYGEE KKKKSIPAGK
0401: GVEKGEGSGG GKGEGSGGGK GEGSSESKSE SSHELYNLVC FSRKDFGLIV GVDDKGDGYK VLKEGSDGPV VVSVGKKEMQ EPFDSKFSAL DLNNKQISIG
0501: DVVKIAKGPS EGKQGVVRQV YRGIIFLYAE GEEENGGYLC CKSQSCEKVK LFTEESNDKT GGFDASAFGD SASSPKSPLS PEKEWQQQPK EKYINSNQGD
0601: KGSMYSIGQK LRIRVGPLKG YLCRVIALRY SDITVKLDSQ HKIFTVKSEH LAEVRDRNTV PSMSGDAGMG SFQQFDMLGT EGNNGDWAKG AGTSEDNTST
0701: WGSTAAENKP DSAGDQSGGW NAWGKPPAPE ASTVGAWGDA STPKVEASWG KQGASTSNVE DSGSWGKHGG SSDGNKQNDD SVWGKLVEES SQKKEESSWG
0801: KKTGSDSDLG KGNGESTWGN KDGNSSASNK EGVSWGQHDK GSDGDQGGSS WGKKNDSVKD DGGSSWGKKD DGGSTWGKKD DGGSSWGKKV DDVIKDDGGS
0901: SWDKKVEGNK DDGGSSWGKK VDCNKDDGGS SWGKKVEGNK DDGGSSWGKK VDCNKDDGGS SWGKKDDGGP SWNKKDDGNK DDGGSAWGKK VESGSSWRNK
1001: DGGSSWGNKD GGSSWAKKDD GGYSEQTFDR GGRGFGGRRG GGRRGGRDQF GRGRSFGHSE DQAPWSKPGG GGGSSWGKQD SGGGGSSWGK DNDAGGGSSW
1101: GKQNNAGGGG GSSWSKDNDA GGGSSWGKQN NAGGGGSSWG QEKDAGGGSS LGKQGSDGGG SSWGKKNDTG GGGSSWGQDN NAGGGSSWGK QASDGGGSSW
1201: GKKNDAGGGG GSSWGKDNDA GGGSSWGKQG SDGGGSSWGK KNDAGGGGSS WGKQGSDGGG SSWGKKSDGG GGGSSWGQEN NAGGGSSWGK QGSDGGGSSW
1301: GKKNDAGGGG GSSWGQQGGG GSAWANKQNN DGGGGQSWSK QDDGGSKPWG EQSGGRGFGG RRGGGFRGGF RGGRNQLGRD GGGRSFESSG WKRDNQENTT
1401: WKSNNQSGGS DWKKSWGEDS NTAKPSDSSS AGGNWGSWDA NSKKETNAGG GWGANSKNET STGGDWGSNS KKETNAVDGD KPSNENKAAA AWGTPANDQE
1501: NAGNNNDGWG KKPSDDVKTS GAADNAWGGK TNAGASSSSG SAW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.