Factsheet for AT5G04290.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02120.t01	Wine grape	cytosol	5.02	60.48
CDY41384	Canola	nucleus	30.54	60.4
VIT_00s0131g00430.t01	Wine grape	cytosol	5.89	55.7
VIT_13s0019g04950.t01	Wine grape	nucleus	21.03	50.56
CDX70245	Canola	nucleus	34.83	46.1
GSMUA_Achr7P16990_001	Banana	nucleus, plastid	16.48	38.92
Bra009470.1-P	Field mustard	nucleus	38.45	37.2
VIT_19s0093g00140.t01	Wine grape	plastid	5.22	31.08
KRG90770	Soybean	nucleus	29.07	29.03
KRH35991	Soybean	nucleus	27.39	28.17
Solyc11g008150.1.1	Tomato	nucleus	26.66	26.38
AT4G08350.1	Thale cress	nucleus	16.54	23.73
TraesCS1D01G325500.1	Wheat	nucleus	21.37	22.87
AT2G34210.1	Thale cress	nucleus	15.07	22.75
TraesCS1B01G337800.2	Wheat	nucleus	23.38	22.22
OQU78267	Sorghum	nucleus	23.58	22.12
TraesCS1A01G324800.1	Wheat	nucleus	22.84	22.04
HORVU1Hr1G075270.8	Barley	nucleus, plastid	23.04	21.57
Zm00001d038644_P004	Maize	nucleus	22.71	21.07
Zm00001d010719_P002	Maize	nucleus	21.5	20.16
Os05t0506200-01	Rice	nucleus	7.57	19.28
AT4G08360.1	Thale cress	cytosol	1.14	12.06

Protein Annotations

MapMan:12.5.1.5	Gene3D:2.30.30.30	Gene3D:3.30.70.940	EntrezGene:830308	ProteinID:AED90724.1	ProteinID:ANM70420.1
ArrayExpress:AT5G04290	EnsemblPlantsGene:AT5G04290	RefSeq:AT5G04290	TAIR:AT5G04290	RefSeq:AT5G04290-TAIR-G	EnsemblPlants:AT5G04290.1
TAIR:AT5G04290.1	Unigene:At.54715	EMBL:B61983	EMBL:B61984	UniProt:F4JW79	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0006342	GO:GO:0006355	GO:GO:0006357
GO:GO:0006368	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016458	GO:GO:0030422	GO:GO:0031047	GO:GO:0032044	GO:GO:0040029
GO:GO:0080188	InterPro:IPR014722	InterPro:IPR036735	InterPro:KOW	Symbol:KTF1	InterPro:NGN_dom_sf
RefSeq:NP_001332032.1	RefSeq:NP_196049.1	PFAM:PF03439	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR11125	PANTHER:PTHR11125:SF8	InterPro:Rib_L2_dom2
SMART:SM00739	InterPro:TF_Spt5_NGN-domain	UniParc:UPI0000162455	SEG:seg	:	:

Description

RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]

Coordinates

chr5:+:1196069..1202653

Molecular Weight (calculated)

158046.0 Da

IEP (calculated)

5.347

GRAVY (calculated)

-1.080

Length

1493 amino acids

Sequence
(BLAST)

0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSHESLNIER NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA SEAGTVSGWG DTSASNVEAS
0801: SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS
0901: NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG
1001: SSWGKKDDGG SSWGKKDDGG SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG YSEQTFDRGG RGFGGRRGGG
1101: RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD
1201: GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS
1301: SWGKQNDGGG GSSWGKQGDG GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS GGSDWKKGWG EDSNNSKPSG
1401: SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.