Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34005 | Canola | cytosol | 86.74 | 86.0 |
| Bra000641.1-P | Field mustard | cytosol | 85.78 | 85.78 |
| CDX83142 | Canola | cytosol | 85.78 | 85.78 |
| CDY36201 | Canola | cytosol | 17.2 | 82.87 |
| CDX75158 | Canola | cytosol | 52.83 | 82.71 |
| Bra037857.1-P | Field mustard | cytosol | 18.83 | 78.09 |
| KRH53382 | Soybean | nucleus | 72.62 | 72.76 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 72.14 | 72.63 |
| KRH64551 | Soybean | nucleus | 73.2 | 72.57 |
| Bra037858.1-P | Field mustard | cytosol | 5.57 | 69.88 |
| AT2G34210.1 | Thale cress | nucleus | 64.94 | 68.35 |
| Solyc04g064700.2.1 | Tomato | nucleus | 68.11 | 68.17 |
| PGSC0003DMT400063938 | Potato | nucleus | 54.18 | 66.59 |
| AT4G08360.1 | Thale cress | cytosol | 8.93 | 65.96 |
| AT5G04290.1 | Thale cress | nucleus | 23.73 | 16.54 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EntrezGene:826391 | UniProt:A0A178UTQ8 | ProteinID:AEE82629.1 |
| ArrayExpress:AT4G08350 | EnsemblPlantsGene:AT4G08350 | RefSeq:AT4G08350 | TAIR:AT4G08350 | RefSeq:AT4G08350-TAIR-G | EnsemblPlants:AT4G08350.1 |
| TAIR:AT4G08350.1 | Unigene:At.33758 | ProteinID:CAB52557.1 | ProteinID:CAB77960.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006368 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032044 | GO:GO:0032784 | Symbol:GTA02 | InterPro:IPR014722 |
| InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | RefSeq:NP_192575.3 | ProteinID:OAO97396.1 |
| PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | PO:PO:0000293 | ScanProsite:PS01108 |
| PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 | UniProt:Q9STN3 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 |
| SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI0001E92EF7 | SEG:seg | : | : | : | : |
Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
Coordinates
chr4:+:5286158..5292270
Molecular Weight (calculated)
115412.0 Da
IEP (calculated)
5.086
GRAVY (calculated)
-0.660
Length
1041 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.