CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77061
CDY04475
CDY48192
CDY56413
CDY62055

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08350.1	CDX77061	AT2G27040.1	19343051
AT4G08350.1	CDY04475	AT2G27040.1	19343051
AT4G08350.1	CDY48192	AT2G27040.1	19343051
AT4G08350.1	CDY56413	AT2G27040.1	19343051
AT4G08350.1	CDY62055	AT2G27040.1	19343051

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000641.1-P	Field mustard	cytosol	100.0	100.0
CDY34005	Canola	cytosol	94.04	93.24
AT4G08350.1	Thale cress	nucleus	85.78	85.78
CDX75158	Canola	cytosol	53.89	84.36
CDY36201	Canola	cytosol	16.91	81.48
CDY36202	Canola	cytosol, extracellular	10.09	74.47
CDX75160	Canola	cytosol	19.98	72.22
KRH53382	Soybean	nucleus	71.66	71.8
KRH64551	Soybean	nucleus	72.05	71.43
VIT_18s0001g15400.t01	Wine grape	cytosol	70.61	71.08
CDY61565	Canola	nucleus	62.92	66.84
CDX84655	Canola	nucleus	64.36	65.62
Solyc04g064700.2.1	Tomato	nucleus	65.13	65.19
PGSC0003DMT400063938	Potato	nucleus	52.93	65.05
CDY36200	Canola	peroxisome	0.86	47.37
CDY41384	Canola	nucleus	19.69	27.15
CDX70245	Canola	nucleus	23.05	21.28

Protein Annotations

MapMan:15.3.6.3.2	Gene3D:2.30.30.30	Gene3D:3.30.70.940	GO:A0A078D228	EnsemblPlants:CDX83142	ProteinID:CDX83142
ProteinID:CDX83142.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006355	GO:GO:0006357
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0032784	EnsemblPlantsGene:GSBRNA2T00138665001	InterPro:IPR014722	InterPro:IPR036735	InterPro:KOW	InterPro:NGN_dom
InterPro:NGN_dom_sf	PFAM:PF00467	PFAM:PF03439	PFAM:PF11942	PIRSF:PIRSF036945	ScanProsite:PS01108
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	SMART:SM00738	SMART:SM00739	SUPFAM:SSF50104	InterPro:Spt5_N
InterPro:TF_Spt5	InterPro:TF_Spt5_NGN-domain	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002540265	SEG:seg	:

Description

BnaA03g23640D

Coordinates

chrLK031832:+:27057..32323

Molecular Weight (calculated)

115000.0 Da

IEP (calculated)

4.986

GRAVY (calculated)

-0.639

Length

1041 amino acids

Sequence
(BLAST)

0001: MPRHRGEEDD VDEDYDGMEL EEEEEEDEGR SRGGGSRQKR GRSSFFDDYA EEDSEEEEDD DDDEDYGSRR GKGGGGGAAK RKKSSAAMFV DDIADQVDDD
0101: DEEGDEEDGE DGFIVDTGTD LPDERVDRRR YHDRGFDEND EDVDDLERRI QERFSRPQED YDEEATDVEQ QALLPSVRDP KLWMVKCAIG REREVAVCLM
0201: QKYIDRGSDL QIRSVVALDH LKNYIYVEAD KEAHVKEAIK GMRNIYANQK ILLVPIREMT DVLSVESKAI DLSRDTWVRM KIGTYKGDLA KVVDVDNVRQ
0301: RVTVKLIPRI DLQALASKLD GREVAKKKAF VPPPRFMNID EARELHIRVE RRRDPMTGDY FENIGGMLFK DGFMYKTVSL KSIIAQNVTP TFDELEKFNK
0401: PSENGESGDF GGLSTLFANR KKGHFMKGDA VIVIKGDLKN LKGWVEKVDE DNVLIRSGLK GLPDPLAVNE KELCKYFEPG NHVKVVSGTH EGATGMVVKV
0501: DQHVLILLSD TTKEHVRVFA DHVVESSEVT TGVTKIGQYE LHDLVLLDNL TFGVTIRLEN EAFQVLKGNP DRPEVALVKL REIKCKLDRK ISVQDRYKNV
0601: ISVGDDVRIV EGPSKGKQGP VRHIYKGVLF IYDRHHLEHA GFICAKCTSC VVVGGSRSGA NRSGGDSLSR FSNFKAPAPV PPSPRRFQRG GMGYNARGRG
0701: RGGRGGRDDS LLGTTVKIRL GPFKGYRGPV VEVKGDSVRV ELEMKILYNA VDRNAISDNV AVTTPSRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWEE GNPGSWGTSP NYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDSGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVEIHKAGED SDVGVIRDVS DGTCKVSLGS NGEGDTIMAL PGELEIVPPR KNDRVKIVGG
1001: QYRGSIGKLI GIDGSDGIVK IEDNLDVKIL DLAILAKFVQ P

Best Arabidopsis Sequence Match ( AT4G08350.1 )
(BLAST)

0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P

Arabidopsis Description

GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.