Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36202 | Canola | cytosol, extracellular | 38.19 | 78.01 |
| AT4G08360.1 | Thale cress | cytosol | 26.39 | 53.9 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 42.36 | 49.8 |
| CDY34005 | Canola | cytosol | 73.61 | 20.19 |
| CDX83142 | Canola | cytosol | 72.22 | 19.98 |
| CDY61565 | Canola | nucleus | 53.12 | 15.61 |
| CDX84655 | Canola | nucleus | 53.47 | 15.08 |
| CDX70245 | Canola | nucleus | 16.67 | 4.26 |
| CDY41384 | Canola | nucleus | 9.72 | 3.71 |
| CDY36201 | Canola | cytosol | 2.08 | 2.78 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 1.04 | 2.48 |
| CDX75158 | Canola | cytosol | 5.21 | 2.26 |
| CDY36200 | Canola | peroxisome | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX75160 | EnsemblPlantsGene:GSBRNA2T00118967001 | InterPro:KOW | InterPro:Translation_prot_SH3-like_sf | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 |
| ProteinID:CDX75160 | ProteinID:CDX75160.1 | SEG:seg | SMART:SM00739 | SUPFAM:SSF50104 | UniParc:UPI0004EED440 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC09g25220D
Coordinates
chrLK031803:+:1200055..1201721
Molecular Weight (calculated)
30526.8 Da
IEP (calculated)
4.562
GRAVY (calculated)
-0.443
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMRELEVYV EDGDGDERAR GCPRVLLASA AGRGVRTQVR RSFLRQSNEH EFFKTLPQPQ TQVAAATKRT ALDNWEEGNP GSRGTSPQYQ PGSPPSRAYE
101: APTPGSGWAS TPGGSYSDAG MPRDHSSAYA NAPSPYIQST PGQPMTPSST SYLPGTPGGQ PMTPGTGLDV MSPVIGGDAE AWFMPDILVD IHKVGEDSDL
201: GVIRDVSDGT CKVSLGSSGE GDTIMALPSE LEIVPPRKND RVKIVGGQFR GSIGTLIGID GSDGIVKIEE NLDVKILDLA ILAKFVQP
101: APTPGSGWAS TPGGSYSDAG MPRDHSSAYA NAPSPYIQST PGQPMTPSST SYLPGTPGGQ PMTPGTGLDV MSPVIGGDAE AWFMPDILVD IHKVGEDSDL
201: GVIRDVSDGT CKVSLGSSGE GDTIMALPSE LEIVPPRKND RVKIVGGQFR GSIGTLIGID GSDGIVKIEE NLDVKILDLA ILAKFVQP
001: MSDQVSGKST KFGKVKITSN NMDHHSCAEE YSDEDVEVRF MPDILVTVHN SEVGVIRDVS DGMCKVSLGS GGEGDTIMVP SSELEIVRPR KSDHVKILGG
101: SYLGLTCKLI GIDGLDAIVK IDGNLDVKIL DLALLAKFVQ P
101: SYLGLTCKLI GIDGLDAIVK IDGNLDVKIL DLALLAKFVQ P
Arabidopsis Description
KOW domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9STN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.