CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77061
CDY04475
CDY48192
CDY56413
CDY62055

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08350.1	CDX77061	AT2G27040.1	19343051
AT4G08350.1	CDY04475	AT2G27040.1	19343051
AT4G08350.1	CDY48192	AT2G27040.1	19343051
AT4G08350.1	CDY56413	AT2G27040.1	19343051
AT4G08350.1	CDY62055	AT2G27040.1	19343051

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037858.1-P	Field mustard	cytosol	9.47	75.9
CDY36201	Canola	cytosol	23.01	70.83
CDX83142	Canola	cytosol	84.36	53.89
CDY34005	Canola	cytosol	84.66	53.62
AT4G08350.1	Thale cress	nucleus	82.71	52.83
CDY36200	Canola	peroxisome	1.5	52.63
PGSC0003DMT400063938	Potato	nucleus	62.86	49.35
VIT_18s0001g15400.t01	Wine grape	cytosol	70.68	45.45
KRH53382	Soybean	nucleus	68.87	44.08
KRH64551	Soybean	nucleus	69.17	43.81
CDY61565	Canola	nucleus	63.16	42.86
CDX84655	Canola	nucleus	64.96	42.31
Solyc04g064700.2.1	Tomato	nucleus	63.31	40.48
CDY41384	Canola	nucleus	20.0	17.62
CDX70245	Canola	nucleus	22.26	13.12
CDX75160	Canola	cytosol	2.26	5.21
CDY36202	Canola	cytosol, extracellular	1.05	4.96

Protein Annotations

MapMan:15.3.6.3.2	Gene3D:2.30.30.30	Gene3D:3.30.70.940	GO:A0A078CJC1	EnsemblPlants:CDX75158	ProteinID:CDX75158
ProteinID:CDX75158.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006355	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00118964001
InterPro:IPR014722	InterPro:IPR036735	InterPro:KOW	InterPro:NGN_dom_sf	PFAM:PF00467	PFAM:PF03439
ScanProsite:PS01108	PANTHER:PTHR11125	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104
InterPro:TF_Spt5_NGN-domain	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EEF54C	SEG:seg	:	:

Description

BnaC09g25240D

Coordinates

chrLK031803:+:1194078..1198554

Molecular Weight (calculated)

74662.1 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.337

Length

665 amino acids

Sequence
(BLAST)

001: MAHQVDDDDE EEDGDAEDDF IVDAGTDLPD KRGDRRRYND RADKEAHVKE AIKGMRNIYA NQKILLVPIR EMTDVLCVES KAIDLSRDTW VRMKIGTYKG
101: DLAKVVDVDN VRQRVTVKLI PRIDLQALAS KLDGREVVKK KAFVPPPRFM NIDEARELHI RVERRRDPMT GDYFENIGGM LFKDGFMYKA VSLKSIIAQN
201: VTPTFDELEK FNRPSENGEA EFGGLSTLFA NRKKGHFMKG DAVIVIKGDL KNLKGWVEKV DEENVLIRSG MKGLPDPLAV NEKELCKYFE PGNHVKVVSG
301: THEGATGMVV KVDQHVLIIL SDMTKEHVRV FADHVVESSE VTTGVTMILS FWSNNPSFGV IIRLENEAFQ VLKGNPDRPE VALVKLREIK CKLDRKISVQ
401: DRYKGKQGPV RHIYKGVLFI YDRHHLEHAG FICAKCTSCI VVGGSRSGAN RNGGDSLSRF SNFKAPAPVP PSPRRFQRGG MGYNGMFRFL LSILIEGGRD
501: DSLLGTTVKI RLGPFKGYRG PVVEVKGDSV RVELEMKILN GLLTIIVYAV DRNAISDNVS VITPSRDISR YSMGSETPMH PSRTPLHPYM TPMRDSGATP
601: IHDGVRTPMR DRAWNPYTPM SPPRFLRLSL FVSKTQDIAA AADAENRFSS VNLVAADAIF FYFIF

Best Arabidopsis Sequence Match ( AT4G08350.1 )
(BLAST)

0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P

Arabidopsis Description

GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.