Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0009g01200.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | VIT_06s0009g01200.t01 | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 11.51 | 81.51 |
| KRH53382 | Soybean | nucleus | 78.92 | 78.54 |
| KRH64551 | Soybean | nucleus | 79.59 | 78.38 |
| Solyc04g064700.2.1 | Tomato | nucleus | 73.5 | 73.08 |
| AT4G08350.1 | Thale cress | nucleus | 72.63 | 72.14 |
| PGSC0003DMT400063938 | Potato | nucleus | 58.7 | 71.66 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 69.54 | 71.47 |
| CDX75158 | Canola | cytosol | 45.45 | 70.68 |
| CDX83142 | Canola | cytosol | 71.08 | 70.61 |
| Bra000641.1-P | Field mustard | cytosol | 71.08 | 70.61 |
| CDY34005 | Canola | cytosol | 71.47 | 70.38 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 8.22 | 70.25 |
| Os06t0208300-01 | Rice | cytosol | 19.54 | 69.42 |
| CDY36201 | Canola | cytosol | 14.12 | 67.59 |
| EER88041 | Sorghum | nucleus | 68.18 | 67.14 |
| Zm00001d037142_P001 | Maize | cytosol | 66.83 | 66.44 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 67.5 | 66.41 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 67.31 | 66.29 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 67.5 | 66.22 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 67.12 | 65.97 |
| Bra037857.1-P | Field mustard | cytosol | 15.76 | 64.94 |
| Bra037858.1-P | Field mustard | cytosol | 5.03 | 62.65 |
| CDY61565 | Canola | nucleus | 58.61 | 61.84 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 64.41 | 61.78 |
| AT2G34210.1 | Thale cress | nucleus | 58.22 | 60.87 |
| OQU85804 | Sorghum | cytosol | 59.57 | 60.81 |
| Bra022968.1-P | Field mustard | nucleus | 59.38 | 60.2 |
| CDX84655 | Canola | nucleus | 58.99 | 59.75 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 59.09 | 58.75 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 58.9 | 58.67 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 58.61 | 58.44 |
| Os02t0772000-00 | Rice | nucleus | 18.18 | 54.34 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 5.61 | 46.77 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 6.29 | 41.14 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 21.47 | 35.75 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 7.35 | 30.28 |
Protein Annotations
| EntrezGene:100267652 | wikigene:100267652 | MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | EMBL:AM464739 |
| ProteinID:CAN68098 | ProteinID:CAN68098.1 | ProteinID:CBI19960 | ProteinID:CBI19960.3 | UniProt:E0CQN1 | EMBL:FN595227 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006368 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032044 | GO:GO:0032784 | InterPro:IPR014722 |
| InterPro:IPR036735 | InterPro:KOW | EntrezGene:LOC100267652 | wikigene:LOC100267652 | InterPro:NGN_dom | InterPro:NGN_dom_sf |
| PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | ScanProsite:PS01108 | InterPro:Rib_L2_dom2 |
| InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 |
| InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0001BE187F | ArrayExpress:VIT_18s0001g15400 | EnsemblPlantsGene:VIT_18s0001g15400 | EnsemblPlants:VIT_18s0001g15400.t01 |
| RefSeq:XP_002265283 | RefSeq:XP_002265283.2 | RefSeq:XP_003634397 | RefSeq:XP_003634397.1 | SEG:seg | : |
Description
Transcription elongation factor SPT5 [Source:UniProtKB/TrEMBL;Acc:E0CQN1]
Coordinates
chr18:+:13526007..13535458
Molecular Weight (calculated)
115175.0 Da
IEP (calculated)
4.997
GRAVY (calculated)
-0.643
Length
1034 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRRRHDDDD DDLEPEEDDV LDDDEDYEDE DVGVGSSRKR SRSEFIDDVA EEDDDEDDDD DDEDFGGSRR GSHRAKRRSG SEFLDLEAAV DSDEEEEEED
0101: GEDDFIVDAG AELPDEDDGQ RMRRRPLLPQ EDEQEDFEAL ERKIQERYGK SSHAEYDEET TEVEQQALLP SVRDPKLWMV KCAIGHEREA AVCLMQKSID
0201: KGPEVQIRSA IALDHLKNYI YIEADKEAHV KEACKGLRNI YAQKVMLVPI REMTDVLSVE SKAVDLSRNT WVRMKIGTYK GDLAKVVDVD NVRQRVTVQL
0301: IPRIDLQALA NKLEGREVVT KKAFKPPPRF MNVEEAREMH IRVERRRDPM TGDYFENIGG MMFKDGFLYK TVSMKSISVQ NIQPTFDELE KFRTPGETED
0401: GDMASLSTLF ANRKKGHFMK GDAVIIVKGD LKNLKGWVEK VEEENVHIRP EMKGLPKTLA VNEKELCKYF EPGNHVKVVS GTQEGATGMV VKVEGHVLII
0501: LSDTTKEHLR VFADDVVESS EVTSGVTRIG DYELHDLVLL DNLSFGVIIR VESEAFQVLK GVPDRPEVVL VKLREIKFKI DKRVNVQDRF KNTVSVKDVV
0601: RILDGPCKGK QGPVEHIYKG VLFIYDRHHL EHAGFICAKS HSCVVVGGSR SNADRSGDSF SRFANLRTPP RVPESPRRFP RGGRPMDSGG RHRGGRGHDS
0701: LIGSTIKIRQ GPFKGYRGRV VDVNGQSVRV ELESQMKVVT VDRNQISDNV AVATPYRDAP RYGMGSETPM HPSRTPLHPY MTPMRDVGAT PIHDGMRTPM
0801: RDRAWNPYAP MSPPRDNWEE GNPDSWVTTS PQYQPGSPPS RTYEAPTPGS GWASTPGGNY SEAGTPRDST PAYANVPSPY LPSTPGGQPM TPNSVSYLPG
0901: TPGGQPMTPG TGVDVMSPIG GEQEGPWFMP DILVHIRRPG EENTLGVIRE VLPDGTYRVG LGSSGGGEIV TVLHAEIDAV APRKSDKIKI MGGAHRGATG
1001: KLIGVDGTDG IVKVDDTLDV KILDMVLLAK LVQP
0101: GEDDFIVDAG AELPDEDDGQ RMRRRPLLPQ EDEQEDFEAL ERKIQERYGK SSHAEYDEET TEVEQQALLP SVRDPKLWMV KCAIGHEREA AVCLMQKSID
0201: KGPEVQIRSA IALDHLKNYI YIEADKEAHV KEACKGLRNI YAQKVMLVPI REMTDVLSVE SKAVDLSRNT WVRMKIGTYK GDLAKVVDVD NVRQRVTVQL
0301: IPRIDLQALA NKLEGREVVT KKAFKPPPRF MNVEEAREMH IRVERRRDPM TGDYFENIGG MMFKDGFLYK TVSMKSISVQ NIQPTFDELE KFRTPGETED
0401: GDMASLSTLF ANRKKGHFMK GDAVIIVKGD LKNLKGWVEK VEEENVHIRP EMKGLPKTLA VNEKELCKYF EPGNHVKVVS GTQEGATGMV VKVEGHVLII
0501: LSDTTKEHLR VFADDVVESS EVTSGVTRIG DYELHDLVLL DNLSFGVIIR VESEAFQVLK GVPDRPEVVL VKLREIKFKI DKRVNVQDRF KNTVSVKDVV
0601: RILDGPCKGK QGPVEHIYKG VLFIYDRHHL EHAGFICAKS HSCVVVGGSR SNADRSGDSF SRFANLRTPP RVPESPRRFP RGGRPMDSGG RHRGGRGHDS
0701: LIGSTIKIRQ GPFKGYRGRV VDVNGQSVRV ELESQMKVVT VDRNQISDNV AVATPYRDAP RYGMGSETPM HPSRTPLHPY MTPMRDVGAT PIHDGMRTPM
0801: RDRAWNPYAP MSPPRDNWEE GNPDSWVTTS PQYQPGSPPS RTYEAPTPGS GWASTPGGNY SEAGTPRDST PAYANVPSPY LPSTPGGQPM TPNSVSYLPG
0901: TPGGQPMTPG TGVDVMSPIG GEQEGPWFMP DILVHIRRPG EENTLGVIRE VLPDGTYRVG LGSSGGGEIV TVLHAEIDAV APRKSDKIKI MGGAHRGATG
1001: KLIGVDGTDG IVKVDDTLDV KILDMVLLAK LVQP
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.