Factsheet for Zm00001d044436_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047048_P001	Maize	cytosol, mitochondrion, peroxisome	76.03	63.01
Zm00001d037142_P001	Maize	cytosol	80.99	9.42
Zm00001d044971_P005	Maize	cytosol, nucleus, plastid	80.99	9.09
VIT_18s0001g15400.t01	Wine grape	cytosol	70.25	8.22
KRH53382	Soybean	nucleus	66.94	7.8
KRH64551	Soybean	nucleus	66.12	7.62
Bra000641.1-P	Field mustard	cytosol	62.81	7.3
Solyc04g064700.2.1	Tomato	nucleus	61.16	7.12
Bra022968.1-P	Field mustard	nucleus	57.85	6.86
Bra037857.1-P	Field mustard	cytosol	14.05	6.77
Bra037858.1-P	Field mustard	cytosol	1.65	2.41
CDX75160	Canola	cytosol	2.48	1.04
Zm00001d010719_P002	Maize	nucleus	7.44	0.57
Zm00001d038644_P004	Maize	nucleus	7.44	0.56
AT4G08360.1	Thale cress	cytosol	0.0	0.0
PGSC0003DMT400063939	Potato	cytoskeleton, cytosol, peroxisome	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	UniProt:A0A1D6NLS4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003746	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722
InterPro:KOW	ProteinID:ONM41160.1	PFAM:PF00467	ScanProsite:PS01108	PFscan:PS51257	PANTHER:PTHR11125
PANTHER:PTHR11125:SF7	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	SignalP:SignalP-noTM
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0008431E02	EnsemblPlantsGene:Zm00001d044436	EnsemblPlants:Zm00001d044436_P001	EnsemblPlants:Zm00001d044436_T001	:

Description

Putative transcription elongation factor SPT5 homolog 1

Coordinates

chr3:+:228053712..228054258

Molecular Weight (calculated)

13411.6 Da

IEP (calculated)

8.501

GRAVY (calculated)

-0.034

Length

121 amino acids

Sequence
(BLAST)

001: MNLRSLRSLV MTSMATWLAC PLCLQTGKKG HFMKGDAVIV IKGDLKNLEG WVEKVEDETV HIRPKISDLS KTLAFNEKEL CKYFKPGDHV KVISGVQEGA
101: TGMVVKVEGH VLIILSDTTK E

Best Arabidopsis Sequence Match ( AT4G08350.1 )
(BLAST)

0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P

Arabidopsis Description

GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.