Factsheet for Zm00001d044971_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047048_P001	Maize	cytosol, mitochondrion, peroxisome	12.8	94.52
EER88041	Sorghum	nucleus	88.4	90.76
Zm00001d037142_P001	Maize	cytosol	85.9	89.04
Os06t0208300-01	Rice	cytosol	23.75	87.97
TraesCS7B01G073100.1	Wheat	cytosol	82.1	84.21
TraesCS7A01G168300.1	Wheat	nucleus	81.82	84.0
TraesCS7D01G169200.1	Wheat	cytosol	81.91	83.94
HORVU7Hr1G035280.12	Barley	cytosol	80.7	82.54
Zm00001d044436_P001	Maize	extracellular, mitochondrion	9.09	80.99
GSMUA_Achr3P08080_001	Banana	cytosol	68.18	73.06
VIT_18s0001g15400.t01	Wine grape	cytosol	61.78	64.41
KRH53382	Soybean	nucleus	61.69	64.0
KRH64551	Soybean	nucleus	62.24	63.9
Solyc04g064700.2.1	Tomato	nucleus	60.2	62.4
Bra000641.1-P	Field mustard	cytosol	57.24	59.27
Bra037858.1-P	Field mustard	cytosol	4.17	54.22
Bra022968.1-P	Field mustard	nucleus	50.56	53.43
Bra037857.1-P	Field mustard	cytosol	10.67	45.82
CDY36202	Canola	cytosol, extracellular	5.75	43.97
CDY36200	Canola	peroxisome	0.56	31.58
Zm00001d038644_P004	Maize	nucleus	23.19	15.54
Zm00001d010719_P002	Maize	nucleus	22.36	15.14

Protein Annotations

EntrezGene:103637903	MapMan:15.3.6.3.2	Gene3D:2.30.30.30	Gene3D:3.30.70.940	UniProt:A0A1D6NSH0	ProteinID:AQL01200.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003746
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0032784	InterPro:IPR014722	InterPro:IPR036735	InterPro:KOW
InterPro:NGN_dom	InterPro:NGN_dom_sf	PFAM:PF00467	PFAM:PF03439	PFAM:PF11942	PIRSF:PIRSF036945
ScanProsite:PS01108	PANTHER:PTHR11125	PANTHER:PTHR11125:SF7	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	SMART:SM00738
SMART:SM00739	SUPFAM:SSF50104	InterPro:Spt5_N	InterPro:TF_Spt5	InterPro:TF_Spt5_NGN-domain	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0008433D1F	EnsemblPlantsGene:Zm00001d044971	EnsemblPlants:Zm00001d044971_P005	EnsemblPlants:Zm00001d044971_T005	SEG:seg	:

Description

Putative transcription elongation factor SPT5 homolog 1

Coordinates

chr9:+:8641891..8655103

Molecular Weight (calculated)

119390.0 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.519

Length

1078 amino acids

Sequence
(BLAST)

0001: MARRGHDDDD DEVDEEEEED AYDLDDDEDE DEEDDYEEET RRGKASRGGG GAKSGGGRKR SREDNFIDDS AIEDEDDEDD DGGGRPRKKG GGGVRGFFDE
0101: EAQVDEDEEE EDEGEGEDDF INDAGADLPD EDVVRGSRRH SIPMRDEEED IDEMERQVRE RYARSTHIEY GEEAAEVEQQ ALLPSVKDPK LWMVKCAIGH
0201: ERETAICLMQ KFIDRSDLQI KSVVALDHLK NYIYVEAEKE AHVKEACKGL RNIYASAKIT LVPIKEMADV LSVESKSVDL SRDSWVRMKL GIYKGDLAKV
0301: VDVDNVRQRV DVKLIPRIDL QALASKLEGR DIVKKKAFVP PPRFFNIDEA REMHIRVERR RDKESGEYFE WVDNLKFKDG FLYKSVSTKS IHKSNIQPTF
0401: DELEKFKKPG DDMNGDMASL STLFANRKKG HFMKGDAVIV IKGDLKNLEG WVEKVEDETV HIRPKISDLP KTLAFNEKEL CKYFKPGDHV KVISGVQEGA
0501: TGMVVKVEGH VLIILSDTTK EHIRVFADHV VESSEITTGI TRIGDYELHD LVLLDNLSFG VIIRVEAEAF QVLKGVPDRP EVVLVKLREI KSKIERRSSA
0601: KDRSNNIISA KDVVRVVEGA CKVCPSSVMI LVGCFDSCLS VTFIVFTSMF CQIRGNKDLW NTYTRGCCLS MTGITLNMQV LFVQKRNLAF LLVDQLVAVE
0701: EMFGMDTADA RLDALRSSAS ILQSPGRLPP RGPNMNYGGR FGGGRGGRGY DALVGKCIKI KSGPYKGYRG RVKEVTGALV RVELDSLMKI VTVKRDDIAD
0801: TPTVATPFRE PRYSLGGETP MHPSRTPHHA YQTPMRDPGA TPIHDGMRTP MRSRAWAPMS PPRDNWEDGN PATWGSSPAY QPGTPQARPY EAPTPGSGWA
0901: NTPGVSFNDA PTPRDNYANA PSPYVPSTPV GQPMTPNSAS YLPGTPGGQP MTPGNAGMDM LSPIIGGDGE VAWLLPDVLV NVLRGGDDGP GVVREVLGDG
1001: SCRVALGSSG NGDVVTVLAN EVEVIRPKKS DRIKILNGNF RGYTGKLIGI DGSDGIVRLD ETYEVKILDM VILAKLAT

Best Arabidopsis Sequence Match ( AT2G34210.1 )
(BLAST)

001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE

Arabidopsis Description

Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.