Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G073100.1 | Wheat | cytosol | 98.76 | 98.67 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 98.48 | 98.29 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 96.19 | 95.83 |
| Os06t0208300-01 | Rice | cytosol | 24.76 | 89.35 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 12.38 | 89.04 |
| EER88041 | Sorghum | nucleus | 88.19 | 88.19 |
| Zm00001d037142_P001 | Maize | cytosol | 86.86 | 87.69 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 84.0 | 81.82 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 72.67 | 75.84 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 68.57 | 69.36 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 66.29 | 67.31 |
| KRH53382 | Soybean | nucleus | 66.57 | 67.28 |
| KRH64551 | Soybean | nucleus | 66.57 | 66.57 |
| Solyc04g064700.2.1 | Tomato | nucleus | 64.0 | 64.62 |
| Bra000641.1-P | Field mustard | cytosol | 60.76 | 61.29 |
| Bra037857.1-P | Field mustard | cytosol | 14.19 | 59.36 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 13.24 | 56.73 |
| Bra022968.1-P | Field mustard | nucleus | 52.67 | 54.22 |
| Bra037858.1-P | Field mustard | cytosol | 4.19 | 53.01 |
| CDY36202 | Canola | cytosol, extracellular | 6.19 | 46.1 |
| AT4G08360.1 | Thale cress | cytosol | 5.9 | 43.97 |
| CDY36200 | Canola | peroxisome | 0.57 | 31.58 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 24.38 | 16.55 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 |
| SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS7A01G168300 | EnsemblPlants:TraesCS7A01G168300.1 |
| InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06082 | TIGR:cd06083 | TIGR:cd06084 | TIGR:cd06085 |
| TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:-:124791218..124799898
Molecular Weight (calculated)
115797.0 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.563
Length
1050 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARRGRDDDD DEVEEEEEDE EEAYDLDDEE DDEGDDYEEE ARGRGKAASR SRAPAGGVRK RSRQDNFIDD SAIEDDDEDE EDDGGSRPRK KGGGGVRGFF
0101: DEEAQVDEDE EEEDEGEGED DFINDAGADI PDDDAGRGSR SRHSIPMRDE EEDIDEIERQ VRERYARSTH IEYGEEAADV EQQALLPSVK DPKLWMVKCA
0201: IGHERETAIC LMQKFIDRTD LQIKSVVALD HLKNYIYVEA EKEAHVKEAC KGLRNIYASA KITLVPIKEM ADVLYVESKN VDLARDTWVR MKLGVYKGDL
0301: AKVVDVDNVR QRVTVKLIPR IDLQVLASKL EGRVVAKKKT FVPPPRFFNI DEAREMHIRV ERRRDKDSGE YFEMVDGLMF KDGFLYKPVS IKSIHTQGIQ
0401: PSFDELEKFK KPGDDMNGDM SSLNTLFSNR KKGHFMKGDA VIVVKGDLKN LEGWVEKVED TTVHIRPKIS DLPKTLAFNE KELCKYFKPG DHVKVVSGVQ
0501: EGTTGMVVKV DGHVLIILSD TTKEHIRVFA DHVVESSEIT TGITRIGDYE LHDLVLLDNL SFGVIIRVET EAFQVLKGVP DRPEVVLVKL REIKSKIDRR
0601: TSAKDKFNNM VATKDVVRVV EGACKGTQGP VEHIHKGILF IYDRHHLEHA GFICAKAQSC ILVGGSTGGR RGNGMDAADA RMGALRSPAS ILQSPGRLPP
0701: RGPQMNYGGR FGGGGRGGRG HDALVGKCIK IKSGPYKGYR GRVKEVTGVL VRVELDSLMK IVTVKRDDIA DTPTVATPFR EPRFSLGSET PMHPSRTPLH
0801: PFQTPMRDPG ATPIHDGMRT PMRSRAWAPM SPPRDNWEDG NPDTWGSSPA YQPGTPPARP YEAPTPGSGW ANTPGVSYND VPTPREGNYA NAPSPYVPST
0901: PVGQPMTPNS AAYLPGTPGG QPMTPGNAGM DIMSPVIGGE GEVNWALPDV LVNVLAAGDE GPGVVREVLG DGTCRVALGS SGNGDIVTVL PTELEVIRPK
1001: KSDRIKIMNG TFRGFVGKLI GIDGSDGIVK LDDTYEVKIL DMVILAKLAA
0101: DEEAQVDEDE EEEDEGEGED DFINDAGADI PDDDAGRGSR SRHSIPMRDE EEDIDEIERQ VRERYARSTH IEYGEEAADV EQQALLPSVK DPKLWMVKCA
0201: IGHERETAIC LMQKFIDRTD LQIKSVVALD HLKNYIYVEA EKEAHVKEAC KGLRNIYASA KITLVPIKEM ADVLYVESKN VDLARDTWVR MKLGVYKGDL
0301: AKVVDVDNVR QRVTVKLIPR IDLQVLASKL EGRVVAKKKT FVPPPRFFNI DEAREMHIRV ERRRDKDSGE YFEMVDGLMF KDGFLYKPVS IKSIHTQGIQ
0401: PSFDELEKFK KPGDDMNGDM SSLNTLFSNR KKGHFMKGDA VIVVKGDLKN LEGWVEKVED TTVHIRPKIS DLPKTLAFNE KELCKYFKPG DHVKVVSGVQ
0501: EGTTGMVVKV DGHVLIILSD TTKEHIRVFA DHVVESSEIT TGITRIGDYE LHDLVLLDNL SFGVIIRVET EAFQVLKGVP DRPEVVLVKL REIKSKIDRR
0601: TSAKDKFNNM VATKDVVRVV EGACKGTQGP VEHIHKGILF IYDRHHLEHA GFICAKAQSC ILVGGSTGGR RGNGMDAADA RMGALRSPAS ILQSPGRLPP
0701: RGPQMNYGGR FGGGGRGGRG HDALVGKCIK IKSGPYKGYR GRVKEVTGVL VRVELDSLMK IVTVKRDDIA DTPTVATPFR EPRFSLGSET PMHPSRTPLH
0801: PFQTPMRDPG ATPIHDGMRT PMRSRAWAPM SPPRDNWEDG NPDTWGSSPA YQPGTPPARP YEAPTPGSGW ANTPGVSYND VPTPREGNYA NAPSPYVPST
0901: PVGQPMTPNS AAYLPGTPGG QPMTPGNAGM DIMSPVIGGE GEVNWALPDV LVNVLAAGDE GPGVVREVLG DGTCRVALGS SGNGDIVTVL PTELEVIRPK
1001: KSDRIKIMNG TFRGFVGKLI GIDGSDGIVK LDDTYEVKIL DMVILAKLAA
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.