Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G304800.1 | Wheat | nucleus | 95.57 | 95.38 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 93.64 | 93.73 |
| OQU85804 | Sorghum | cytosol | 67.44 | 69.1 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 69.36 | 68.57 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 64.07 | 66.1 |
| Os02t0772000-00 | Rice | nucleus | 21.87 | 65.61 |
| KRH53382 | Soybean | nucleus | 61.08 | 61.02 |
| KRH64551 | Soybean | nucleus | 61.46 | 60.76 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 58.67 | 58.9 |
| Solyc04g064700.2.1 | Tomato | nucleus | 58.38 | 58.27 |
| Bra000641.1-P | Field mustard | cytosol | 56.55 | 56.39 |
| Bra037857.1-P | Field mustard | cytosol | 13.2 | 54.58 |
| Bra022968.1-P | Field mustard | nucleus | 49.52 | 50.39 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 10.89 | 46.12 |
| Bra037858.1-P | Field mustard | cytosol | 3.56 | 44.58 |
| AT4G08360.1 | Thale cress | cytosol | 5.49 | 40.43 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 22.54 | 15.13 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032784 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 |
| PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | SMART:SM00738 |
| SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS6A01G325100 |
| EnsemblPlants:TraesCS6A01G325100.2 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06082 | TIGR:cd06083 | TIGR:cd06084 |
| TIGR:cd06085 | TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:-:558961441..558967985
Molecular Weight (calculated)
114229.0 Da
IEP (calculated)
4.978
GRAVY (calculated)
-0.559
Length
1038 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSRRGREEEE EEEEFEEVEE EEEADESEVE EEQVEERGGK RSRGGGGKGS GVASFIDDAA SEDDDEEEED DDDDYEEGGG GRARGRRPSK RKRSILIDDM
0101: AQVDDDDGEE EEEDGYEEGF IDDDARADNP DEDVQRGSRR HFNPNPMDDT DDMENLEEML KWKYRTQSHS DFDEEGLTEV EQQALLPSVK DPKLWMVKCA
0201: IGHERETALC LMQKFIDRQD LQIKSVVALE HLKNYIYVEA EKEAHVKEAC KGLRNIFSSA KILLVPTKEM TDVLSVTSKS ADLSRDTWVR LKLGIYKGDL
0301: AKVVEVDDVR QKVTVKLIPR LDLQALTDKL KGLKVAKKKS FIPPRRLFST DEAREMNIPV ERRRDKDSGE YFEMVGALKF EDGFLHKKVS IKSISTQNVK
0401: PSLDELEKFG RVGDDVNEDV AILSTLSRKK GHFMKGDAVV VVKGDLKDIR GCVEKVEDSI VHIRPTRSDL PKTLAFSEKD LCKYFNPGDH VKVVFGVQEG
0501: VTGMVVKVEG HVLTILSDTS KEHIRVFADH VVESSEVTTG LTRIGDYELH DLVLLDNLSF GVIVRVESEA FQVLKGVPDK PEVVLVKLRE IKYKIDRRTS
0601: AKDSKNNTVS TKDIVMVIEG PCKGKQGPVE HIHKGICFIH DRHHLEHSGF ICAKAQSCVL VGGSVVNSSR MGVDTADPRL GAFRSPARIL QSPGGLPPRG
0701: PYMNSGGRFG GGGRGGRGHD ALVSRCIKIK SGPYKGYRGR VKEVNGALVR VELDSLMKIV TVKREDIADT ANVGTPFRES RYSLGSETPM HPSRTPLYPI
0801: QTPMREPGAT PICDGSQTPM HNQAWAPMSP PRDNQEDGNR GTWGAWGISP AYQPGTPVTR PFDAPTPGSG WESTSRTGFG DAPFNAPTPS AQPMTPIPAS
0901: YLPGTPGGQL MTPGNAGMDA MSPMIGDEGG SNWLLPDVCV NVSRGDGSTN GVVKEVLLDG SCRVALGPSG SGDEVTALPD ELEIIRPKKS DRVKIMNGSM
1001: RGVIGRLVGV DGSDGIVRVE SPLDMKIVDL VILGKLAT
0101: AQVDDDDGEE EEEDGYEEGF IDDDARADNP DEDVQRGSRR HFNPNPMDDT DDMENLEEML KWKYRTQSHS DFDEEGLTEV EQQALLPSVK DPKLWMVKCA
0201: IGHERETALC LMQKFIDRQD LQIKSVVALE HLKNYIYVEA EKEAHVKEAC KGLRNIFSSA KILLVPTKEM TDVLSVTSKS ADLSRDTWVR LKLGIYKGDL
0301: AKVVEVDDVR QKVTVKLIPR LDLQALTDKL KGLKVAKKKS FIPPRRLFST DEAREMNIPV ERRRDKDSGE YFEMVGALKF EDGFLHKKVS IKSISTQNVK
0401: PSLDELEKFG RVGDDVNEDV AILSTLSRKK GHFMKGDAVV VVKGDLKDIR GCVEKVEDSI VHIRPTRSDL PKTLAFSEKD LCKYFNPGDH VKVVFGVQEG
0501: VTGMVVKVEG HVLTILSDTS KEHIRVFADH VVESSEVTTG LTRIGDYELH DLVLLDNLSF GVIVRVESEA FQVLKGVPDK PEVVLVKLRE IKYKIDRRTS
0601: AKDSKNNTVS TKDIVMVIEG PCKGKQGPVE HIHKGICFIH DRHHLEHSGF ICAKAQSCVL VGGSVVNSSR MGVDTADPRL GAFRSPARIL QSPGGLPPRG
0701: PYMNSGGRFG GGGRGGRGHD ALVSRCIKIK SGPYKGYRGR VKEVNGALVR VELDSLMKIV TVKREDIADT ANVGTPFRES RYSLGSETPM HPSRTPLYPI
0801: QTPMREPGAT PICDGSQTPM HNQAWAPMSP PRDNQEDGNR GTWGAWGISP AYQPGTPVTR PFDAPTPGSG WESTSRTGFG DAPFNAPTPS AQPMTPIPAS
0901: YLPGTPGGQL MTPGNAGMDA MSPMIGDEGG SNWLLPDVCV NVSRGDGSTN GVVKEVLLDG SCRVALGPSG SGDEVTALPD ELEIIRPKKS DRVKIMNGSM
1001: RGVIGRLVGV DGSDGIVRVE SPLDMKIVDL VILGKLAT
001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE
Arabidopsis Description
Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.