Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88041 | Sorghum | nucleus | 70.09 | 67.62 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 69.1 | 67.44 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 69.1 | 67.31 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 68.81 | 67.21 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 64.96 | 65.41 |
| Os02t0772000-00 | Rice | nucleus | 21.72 | 63.58 |
| KRH53382 | Soybean | nucleus | 62.88 | 61.31 |
| KRH64551 | Soybean | nucleus | 63.18 | 60.95 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 60.81 | 59.57 |
| Solyc04g064700.2.1 | Tomato | nucleus | 60.02 | 58.46 |
| Bra000641.1-P | Field mustard | cytosol | 60.02 | 58.41 |
| Bra037857.1-P | Field mustard | cytosol | 13.52 | 54.58 |
| Bra022968.1-P | Field mustard | nucleus | 51.92 | 51.57 |
| Bra037858.1-P | Field mustard | cytosol | 4.05 | 49.4 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 11.94 | 49.39 |
| AT4G08360.1 | Thale cress | cytosol | 6.32 | 45.39 |
| OQU78267 | Sorghum | nucleus | 24.48 | 15.59 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:A0A1Z5RPZ3 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | EnsemblPlants:OQU85804 |
| ProteinID:OQU85804 | ProteinID:OQU85804.1 | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 |
| ScanProsite:PS01108 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 |
| EnsemblPlantsGene:SORBI_3004G313400 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf |
| UniParc:UPI000B8B9A1D | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:65013661..65020768
Molecular Weight (calculated)
111282.0 Da
IEP (calculated)
5.745
GRAVY (calculated)
-0.485
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEEEEEEE ERGGKRSRAG GRGKRSGGVE SFIDDAASED EDADEEEEDD DDDDDYGGGG RGRASKRRRS SILIDDMAQV DDDDDIDDDS SDVEPGFIDD
0101: TDAGVEIRHN DAARRSIPHS SSMLEDDEDM QEIVRRLQNR YKEASHFDYD EEVTEVEQQA LLPSVKDPKL WMVKCVIGHE RETAVCLMQK FIDRSDLQIK
0201: SVVALEHLKN FIYIEAEKEA HVKEACKGLR NIIASTKPTL VPIREMADVL SIESKSVDLS RDSWVRMKLG MYKGDLAKVV DVDNVGRKVT VKLVPRIDLQ
0301: VLANKLDGQE VPKKSFIPPP RFFSVDEARE LHIRVGRRRN RDSGEYFDVV GGLLFKDGFL HKTFSIKSIS THDIKPSFDE LEKFKKPGDD LNEDVASLST
0401: LFTNRKKGHF MKGDAVIVIK GDLKNLKGSV EKVEDSTVHI QPKLAGLPRT LAFSETDLCK YFNPGDHVKV ISGVQEGATG MVVKVEGHVL IILSDTTKEH
0501: IRVFADHVVE SSEVTTGVTR LGDYELHDLV LLNNSSFGII IRVESEAFQV LKGVPDKPEL VLVKLREIKC KIDRRTSAKD RYNNIVSTKD VVRIAEGACK
0601: GKQGPVEHIH RGILFIYDRH YLEHSGFICA KAQSCFLVGG STGSHCGNSM DKADPQFRAF GSQARILQSP GRLPPKGPHM NSGGRFGGRG SGGRGHDTLV
0701: NRCIKIRSGP YKGYRGRVKE VTGVLVRVEL DSLMKIVTVK REDIGDTAAV ATPFRETCYS RGVETPVHPS RTPLHPIQTP MRDPGATPVR DVMRTPMPNR
0801: AWVPLSPHRD NREDGDSTWA SSPAYQPGTP RPRPYEAPTP GSGWTSWGDA SVNTPSTNVP STPIGQPMTP DPASYLVGTP GGQPMTPGYG GMELMSPVIG
0901: GEAAGSWLLP DVLVNVSRGG DEVSNAVVKE VLPDGSCRVS LGPLGEGDEL IVTANELEVV RPKKNEKLKI MNGPLRGATG KLIGLDGSDG IVKVEGSLDV
1001: KIVDMAILGK LAA
0101: TDAGVEIRHN DAARRSIPHS SSMLEDDEDM QEIVRRLQNR YKEASHFDYD EEVTEVEQQA LLPSVKDPKL WMVKCVIGHE RETAVCLMQK FIDRSDLQIK
0201: SVVALEHLKN FIYIEAEKEA HVKEACKGLR NIIASTKPTL VPIREMADVL SIESKSVDLS RDSWVRMKLG MYKGDLAKVV DVDNVGRKVT VKLVPRIDLQ
0301: VLANKLDGQE VPKKSFIPPP RFFSVDEARE LHIRVGRRRN RDSGEYFDVV GGLLFKDGFL HKTFSIKSIS THDIKPSFDE LEKFKKPGDD LNEDVASLST
0401: LFTNRKKGHF MKGDAVIVIK GDLKNLKGSV EKVEDSTVHI QPKLAGLPRT LAFSETDLCK YFNPGDHVKV ISGVQEGATG MVVKVEGHVL IILSDTTKEH
0501: IRVFADHVVE SSEVTTGVTR LGDYELHDLV LLNNSSFGII IRVESEAFQV LKGVPDKPEL VLVKLREIKC KIDRRTSAKD RYNNIVSTKD VVRIAEGACK
0601: GKQGPVEHIH RGILFIYDRH YLEHSGFICA KAQSCFLVGG STGSHCGNSM DKADPQFRAF GSQARILQSP GRLPPKGPHM NSGGRFGGRG SGGRGHDTLV
0701: NRCIKIRSGP YKGYRGRVKE VTGVLVRVEL DSLMKIVTVK REDIGDTAAV ATPFRETCYS RGVETPVHPS RTPLHPIQTP MRDPGATPVR DVMRTPMPNR
0801: AWVPLSPHRD NREDGDSTWA SSPAYQPGTP RPRPYEAPTP GSGWTSWGDA SVNTPSTNVP STPIGQPMTP DPASYLVGTP GGQPMTPGYG GMELMSPVIG
0901: GEAAGSWLLP DVLVNVSRGG DEVSNAVVKE VLPDGSCRVS LGPLGEGDEL IVTANELEVV RPKKNEKLKI MNGPLRGATG KLIGLDGSDG IVKVEGSLDV
1001: KIVDMAILGK LAA
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.