Factsheet for Os02t0772000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G325100.2	Wheat	nucleus	65.61	21.87
TraesCS6B01G355400.1	Wheat	nucleus	65.32	21.79
TraesCS6D01G304800.1	Wheat	nucleus	65.32	21.73
OQU85804	Sorghum	cytosol	63.58	21.72
Bra037858.1-P	Field mustard	cytosol	4.62	19.28
KRH53382	Soybean	nucleus	57.8	19.25
KRH64551	Soybean	nucleus	57.51	18.95
Solyc04g064700.2.1	Tomato	nucleus	56.07	18.65
Bra000641.1-P	Field mustard	cytosol	55.78	18.54
GSMUA_Achr3P08080_001	Banana	cytosol	53.76	18.49
VIT_18s0001g15400.t01	Wine grape	cytosol	54.34	18.18
Bra022968.1-P	Field mustard	nucleus	45.66	15.49
PGSC0003DMT400063939	Potato	cytoskeleton, cytosol, peroxisome	1.16	1.63
Os05t0506200-01	Rice	nucleus	0.0	0.0
Os06t0208300-01	Rice	cytosol	0.0	0.0
Bra037857.1-P	Field mustard	cytosol	0.0	0.0
AT4G08360.1	Thale cress	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	Gene3D:3.30.70.940	MapMan:35.1	UniProt:A0A0P0VPZ7	ProteinID:BAS81127.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0003824
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005840	GO:GO:0005975	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006357	GO:GO:0006368	GO:GO:0006397	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016760
GO:GO:0019538	GO:GO:0030244	GO:GO:0032044	GO:GO:0032784	InterPro:IPR014722	InterPro:IPR036735
InterPro:NGN_dom	InterPro:NGN_dom_sf	EnsemblPlantsGene:Os02g0772000	EnsemblPlants:Os02t0772000-00	PFAM:PF03439	PFAM:PF11942
PANTHER:PTHR11125	InterPro:Rib_L2_dom2	SMART:SM00738	InterPro:Spt5_N	InterPro:TF_Spt5_NGN-domain	UniParc:UPI000393B4D6
SEG:seg	:	:	:	:	:

Description

Similar to global transcription factor group. (Os02t0772000-00)

Coordinates

chr2:+:32584567..32591373

Molecular Weight (calculated)

38890.9 Da

IEP (calculated)

4.254

GRAVY (calculated)

-0.786

Length

346 amino acids

Sequence
(BLAST)

001: MSRGSREEED EEEVYDSEEE EEEEGEVEER GGKRSRGGGG GGKWSGVESF IDDAASEDED EEEEEDDDED YVGGGGGRAR KRKRASILID DMAQVDDEEE
101: EEEDGEFEDG FIDDTRADDP DQDVGRSSRR HPSSMLDEEE DVDALVKLIH DRYIIPSSHF VDDDDGVTEV EQQALLPSVK DPKLWMVKCA IGHERETAIC
201: LMQKSIDTPD LQIKSVLALD HLKNYIYVEA YKEAHVKEAC KGVRNIFASR KVTLVPIREV ADVLSVQSKS TDISINTWVR MKLGAYKGDL AKVVDVDDVH
301: QKVTVKLIPR IDLQALANKF DGLKVVKEKK SFVPPPKLFS ANEARR

Best Arabidopsis Sequence Match ( AT4G08350.1 )
(BLAST)

0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P

Arabidopsis Description

GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.