Factsheet for Os05t0506200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0275200-00
Os01t0275600-01
Os04t0151800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04290.1	Os01t0275200-00	AT2G27040.1	19410546
AT5G04290.1	Os01t0275600-01	AT2G27040.1	19410546
AT5G04290.1	Os04t0151800-02	AT2G27040.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G325500.1	Wheat	nucleus	37.37	15.7
Os06t0208300-01	Rice	cytosol	7.34	14.78
TraesCS1A01G324800.1	Wheat	nucleus	36.86	13.96
OQU78267	Sorghum	nucleus	37.88	13.95
TraesCS1B01G337800.2	Wheat	nucleus	37.37	13.94
Zm00001d010719_P002	Maize	nucleus	37.54	13.82
Zm00001d038644_P004	Maize	nucleus	36.35	13.24
HORVU1Hr1G075270.8	Barley	nucleus, plastid	35.49	13.04
GSMUA_Achr7P16990_001	Banana	nucleus, plastid	13.48	12.5
VIT_13s0019g04950.t01	Wine grape	nucleus	12.29	11.59
CDX70245	Canola	nucleus	20.65	10.73
CDY41384	Canola	nucleus	11.95	9.27
Bra009470.1-P	Field mustard	nucleus	23.04	8.75
KRH35991	Soybean	nucleus	21.67	8.75
KRG90770	Soybean	nucleus	22.01	8.63
AT5G04290.1	Thale cress	nucleus	19.28	7.57
Solyc11g008150.1.1	Tomato	nucleus	19.28	7.49
VIT_19s0093g00140.t01	Wine grape	plastid	2.22	5.18
Os02t0772000-00	Rice	nucleus	0.0	0.0
VIT_00s0131g00430.t01	Wine grape	cytosol	0.0	0.0
VIT_14s0006g02120.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	ProteinID:BAH93209.1	ProteinID:BAS94795.1	UniProt:C7J286	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355
GO:GO:0006357	GO:GO:0006368	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032044	InterPro:IPR014722	InterPro:KOW	EnsemblPlantsGene:Os05g0506200	EnsemblPlants:Os05t0506200-01
PANTHER:PTHR11125	PANTHER:PTHR11125:SF8	InterPro:Rib_L2_dom2	SMART:SM00739	UniParc:UPI0001B67005	SEG:seg

Description

KOW domain containing protein. (Os05t0506200-01)

Coordinates

chr5:+:25007029..25012046

Molecular Weight (calculated)

63233.3 Da

IEP (calculated)

4.982

GRAVY (calculated)

-1.063

Length

586 amino acids

Sequence
(BLAST)

001: MLTAVDHKKK IICINDTVNV LEGPFQGKQG VVKHLYMGIL FIHNESESEN SGFFCAQCSS CENVKKRKEL ASFTFGNSDD NPIPMFSYEQ NEQRDNERPY
101: RSTREQLFSI GEMLRIRKGP MKGYLCRVVR IFRNDVTVKL DSLLKIVTVQ AEFLSVPAKR GDNSSGAPSG PFGSEADKPS WDNGLPSFGS DSWQPFSSAA
201: LPVQNADGES EVDPWCKKTS SSANDSDPWG TKTKSASVDV WNNSTTQVEN SSDNAWDKQP GGSGPNIGGS SWDRPATDKE SEKSDNWGEA CKETEKTGSD
301: TDPWGSKVKE IDLKETDSWG KASMQPEKKL EDDSQGWGQP VGKSNQDQEK GADKCGAWDT VIAGSSSSVP GRGDDDSWIK TDTLPVAQDD AWGNSKDCSD
401: GAAGWNETRT SKQSHSTGGW DAAAANLNES SDVDAHKDSW GKAKDTTANA EEKNNESGNW NKAGPLDKVC GSDWGSPKFS SGDGPSSWNK GDKIGGDSQN
501: GSWSRPGGNF EGGRGFGRGR GRGRGRESGD FGGRNDQGSW KNSGTSDSSG RPSWRSDSQV EKEVGDSGGY RGRGRGRGQY GGQGRG

Best Arabidopsis Sequence Match ( AT5G04290.2 )
(BLAST)

0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW

Arabidopsis Description

RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.