Factsheet for VIT_13s0019g04950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04290.1	VIT_06s0009g01200.t01	AT2G27040.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0131g00430.t01	Wine grape	cytosol	23.83	93.67
VIT_14s0006g02120.t01	Wine grape	cytosol	17.55	87.9
GSMUA_Achr7P16990_001	Banana	nucleus, plastid	42.67	41.93
CDY41384	Canola	nucleus	48.95	40.26
VIT_19s0093g00140.t01	Wine grape	plastid	15.62	38.65
CDX70245	Canola	nucleus	51.53	28.37
Solyc11g008150.1.1	Tomato	nucleus	59.58	24.52
KRH35991	Soybean	nucleus	57.33	24.52
KRG90770	Soybean	nucleus	57.49	23.88
VIT_18s0001g15400.t01	Wine grape	cytosol	35.75	21.47
AT5G04290.1	Thale cress	nucleus	50.56	21.03
Bra009470.1-P	Field mustard	nucleus	50.56	20.35
TraesCS1D01G325500.1	Wheat	nucleus	38.97	17.35
Zm00001d010719_P002	Maize	nucleus	43.64	17.02
Zm00001d038644_P004	Maize	nucleus	43.96	16.97
TraesCS1A01G324800.1	Wheat	nucleus	42.03	16.87
HORVU1Hr1G075270.8	Barley	nucleus, plastid	43.16	16.8
OQU78267	Sorghum	nucleus	43.0	16.78
TraesCS1B01G337800.2	Wheat	nucleus	42.19	16.68
Os05t0506200-01	Rice	nucleus	11.59	12.29

Protein Annotations

MapMan:12.5.1.5	Gene3D:2.30.30.30	Gene3D:3.30.70.940	ProteinID:CCB56148	ProteinID:CCB56148.1	UniProt:F6HNC9
EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006355	GO:GO:0006357	GO:GO:0006368	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032044	InterPro:IPR014722	InterPro:IPR036735
InterPro:KOW	InterPro:NGN_dom_sf	PFAM:PF03439	PANTHER:PTHR11125	PANTHER:PTHR11125:SF8	InterPro:Rib_L2_dom2
SMART:SM00739	InterPro:TF_Spt5_NGN-domain	UniParc:UPI0002109915	ArrayExpress:VIT_13s0019g04950	EnsemblPlantsGene:VIT_13s0019g04950	EnsemblPlants:VIT_13s0019g04950.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:6641768..6649385

Molecular Weight (calculated)

69824.0 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.612

Length

621 amino acids

Sequence
(BLAST)

001: MRVDFLEDGF NTGLKVKNEP GKAHNLPFFP KEEELSEEEL EKMLEERYKD GSKFVTYAED DYETKRSVQR NSLIPSIKDP TIWKVKCMVG RERLSAFCLM
101: QKYVDLQSLG TKLQIISAFS VEHVKGFIYI EADKQCDINE ACKGLCSIYT SRVAPVPKNE VTHLLSVRSK CNEISEGTWA RMKNGKYKGD LAQIVVVSDA
201: QKKATVKLIP RIDLQAMAEK FGGGVSAKKR NNPAPRLISS SELEEFRPLI QYRRDRDTGK LFEILDGQML KDGYLYKKVS IDSLSCWGVT PSEEELHKFT
301: PSSNEESVDL EWLSQLYGER KQKRTTKSDK GGEKGEGSSG SSMVNSFELH DLVCFGRKDF GIVIGMEKDD NYKILKDGPE GPVVQTVVLH ELKNPLFENK
401: FTALDQHMKT ISINDTLKVL EGPLKGRQGL VKKIYRGVIF LYDENETENN GYFCSKSQMC EKIKLYGDAC NEKGGESGPS GFEDFTSSPQ SPLSPKKPWQ
501: ARENNRDFNR GDKDGMFSVG QTLRIRVGPL KGYLCRVLAI RYSDVTVKLD SQHKVLTVKC EHLSEVRGKG FSVSISDNPE SSSLKSFGLL GTQDSARDWV
601: DGAGTSAESD RWNTGETSAE R

Best Arabidopsis Sequence Match ( AT5G04290.2 )
(BLAST)

0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW

Arabidopsis Description

RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.