Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G324800.1 | Wheat | nucleus | 87.96 | 79.31 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 86.52 | 76.83 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 75.34 | 65.89 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.73 | 53.23 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.73 | 41.77 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 18.64 | 41.14 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 17.35 | 38.97 |
| Zm00001d038644_P004 | Maize | nucleus | 44.8 | 38.84 |
| Os05t0506200-01 | Rice | nucleus | 15.7 | 37.37 |
| OQU78267 | Sorghum | nucleus | 41.58 | 36.46 |
| Zm00001d010719_P002 | Maize | nucleus | 41.51 | 36.37 |
| CDY41384 | Canola | nucleus | 15.77 | 29.14 |
| CDX70245 | Canola | nucleus | 21.58 | 26.68 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.59 | 25.5 |
| KRH35991 | Soybean | nucleus | 24.52 | 23.55 |
| KRG90770 | Soybean | nucleus | 24.3 | 22.68 |
| Bra009470.1-P | Field mustard | nucleus | 23.94 | 21.65 |
| Solyc11g008150.1.1 | Tomato | nucleus | 23.15 | 21.4 |
| AT5G04290.1 | Thale cress | nucleus | 22.87 | 21.37 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 16.06 | 21.29 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 15.2 | 20.38 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW |
| InterPro:NGN_dom_sf | PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 |
| InterPro:TF_Spt5_NGN-domain | EnsemblPlantsGene:TraesCS1D01G325500 | EnsemblPlants:TraesCS1D01G325500.1 | TIGR:cd06081 | TIGR:cd06084 | TIGR:cd09888 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:418192467..418203279
Molecular Weight (calculated)
147993.0 Da
IEP (calculated)
5.737
GRAVY (calculated)
-1.022
Length
1395 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGVKDPIIW RVKCMVGRER QMAFCFMQKF LHLQKFGTKV PIISAFALDH VRGSVFVEAE KACDVTEACK GFCDVYVNRT STVPVAEVRS LLSTRAKPFE
0101: VSPGTWVRMK SGNYKGDLAQ VVSADDGRKK VLIKLIPRVD LHAISKKFGG AIPLKGAAVP APRLISSQEL EFFGPHIESK RDRQTGDVFE VLDGLMFKDG
0201: FLYKRVALSS LIYWGIQPTD TEILKFSSSP SIKSSADDMD WVSGIYGHNK KRNVPREPDM KKSASSKDKS SKASNLKGST STENCDDDDD DAQFNLHDLV
0301: TFGRKDFGVI IAVEKDGFKI LKGGPEGSAV TVRKQDIKKG IVDKMFTAVD HQNKSISMND TVKVLEGPVQ GKQGVVKHLY MGILFIYDES ESENNGFFCA
0401: QCGSCENVKK RRDVTNSDNP VPMFSESAFI SSEQNEQRNN ERPYRAPREQ LFQVGEVLRF RRGPLKGYLC RVVRIFRNDV TVKLDSLLKI VTVQAEFLSV
0501: PTKRGDNSSS APSGNFGTQD TPFTEAAKTS WDNGFASLGS DSWQPFSSSA LPAQNADGET EADPWSKKPT SSADGDSDPW GNKTTSAAVD MWNNSTTQKE
0601: SSTDNAWGKE AGGGGFDAGG SSWGGGAVNK DSEKSGNWGE ACKQVDMATG GDTDPWGSKV KEVVTKEADS WEKSSWSPEK KLEGDGQGWG QPFGKSNQDQ
0701: EKGTVPKDAD KGGSWDTAVA ICVGSDDNDA WAKSAALPVA QDDAWGKSKE SGQNSGSGGW DTVAVGQGQD EAWGNPKDSG AKSEETNNGS GNWNKAGSSD
0801: QVGGSDWGKP TGGAGSSSWN KGEAAEGDNQ NSTWSRPAGN FEGGRGFGRG RGRGRGRESW DSGDRNDEES WKGSWRNDSS AKPSWGSDTQ VGNEGGDSGG
0901: YRGRGRGRGQ YGGRGGGRDN GWRNGDRGSS EFGKERSSSD TPNWGSSQPW SANEGTKPCD ENQTPAWNSS EDKKLSGGEQ GDPWASKVTA KGQEQQTDAW
1001: SSKAAGAENN DGWNTKAKES SCTTGAKWED AASGEKQQDD LWSNKTSSTT KEQETDPWAS KVSSTAAEEK ADPWSTKGGN GNDGGWNNAG SSSWGKPSSS
1101: SGDQEPAWNK PKYGDDNAGY GRGGFGRGNR GRGRGRFGDS GSSWNGGGNT NDGSGGGRSE DQWNSRDSDG GRGRGRGRFG RGDRNQGNNF GSGDGDGGSW
1201: GSGRGNRGRG GGYRNNGNDN NEGRASSQDR GGGWSHSSAW NADKKGSTEE DQSFSKGKSS WGSGNNDSWG APKPSGGDDQ AGKKDGNNTW SQNKPFSGDG
1301: SSILGQWAPA GGTTAGTGGS AGGGGSWGKS NEDSWNSSKG TGGSEGGSKK EGSWDKAEGG GSQGGGGGSS WDKAASGGWD SNKGGDAGNG GGSGW
0101: VSPGTWVRMK SGNYKGDLAQ VVSADDGRKK VLIKLIPRVD LHAISKKFGG AIPLKGAAVP APRLISSQEL EFFGPHIESK RDRQTGDVFE VLDGLMFKDG
0201: FLYKRVALSS LIYWGIQPTD TEILKFSSSP SIKSSADDMD WVSGIYGHNK KRNVPREPDM KKSASSKDKS SKASNLKGST STENCDDDDD DAQFNLHDLV
0301: TFGRKDFGVI IAVEKDGFKI LKGGPEGSAV TVRKQDIKKG IVDKMFTAVD HQNKSISMND TVKVLEGPVQ GKQGVVKHLY MGILFIYDES ESENNGFFCA
0401: QCGSCENVKK RRDVTNSDNP VPMFSESAFI SSEQNEQRNN ERPYRAPREQ LFQVGEVLRF RRGPLKGYLC RVVRIFRNDV TVKLDSLLKI VTVQAEFLSV
0501: PTKRGDNSSS APSGNFGTQD TPFTEAAKTS WDNGFASLGS DSWQPFSSSA LPAQNADGET EADPWSKKPT SSADGDSDPW GNKTTSAAVD MWNNSTTQKE
0601: SSTDNAWGKE AGGGGFDAGG SSWGGGAVNK DSEKSGNWGE ACKQVDMATG GDTDPWGSKV KEVVTKEADS WEKSSWSPEK KLEGDGQGWG QPFGKSNQDQ
0701: EKGTVPKDAD KGGSWDTAVA ICVGSDDNDA WAKSAALPVA QDDAWGKSKE SGQNSGSGGW DTVAVGQGQD EAWGNPKDSG AKSEETNNGS GNWNKAGSSD
0801: QVGGSDWGKP TGGAGSSSWN KGEAAEGDNQ NSTWSRPAGN FEGGRGFGRG RGRGRGRESW DSGDRNDEES WKGSWRNDSS AKPSWGSDTQ VGNEGGDSGG
0901: YRGRGRGRGQ YGGRGGGRDN GWRNGDRGSS EFGKERSSSD TPNWGSSQPW SANEGTKPCD ENQTPAWNSS EDKKLSGGEQ GDPWASKVTA KGQEQQTDAW
1001: SSKAAGAENN DGWNTKAKES SCTTGAKWED AASGEKQQDD LWSNKTSSTT KEQETDPWAS KVSSTAAEEK ADPWSTKGGN GNDGGWNNAG SSSWGKPSSS
1101: SGDQEPAWNK PKYGDDNAGY GRGGFGRGNR GRGRGRFGDS GSSWNGGGNT NDGSGGGRSE DQWNSRDSDG GRGRGRGRFG RGDRNQGNNF GSGDGDGGSW
1201: GSGRGNRGRG GGYRNNGNDN NEGRASSQDR GGGWSHSSAW NADKKGSTEE DQSFSKGKSS WGSGNNDSWG APKPSGGDDQ AGKKDGNNTW SQNKPFSGDG
1301: SSILGQWAPA GGTTAGTGGS AGGGGSWGKS NEDSWNSSKG TGGSEGGSKK EGSWDKAEGG GSQGGGGGSS WDKAASGGWD SNKGGDAGNG GGSGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.