Factsheet for TraesCS7B01G373400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G458900.1	Wheat	mitochondrion	19.21	82.97
HORVU7Hr1G107770.1	Barley	nucleus	55.6	73.08
TraesCS7D01G458800.1	Wheat	nucleus	40.59	68.45
TraesCS7B01G437900.1	Wheat	cytosol	63.1	61.46
TraesCS7B01G437700.1	Wheat	nucleus	68.58	61.32
Os01t0275200-00	Rice	golgi, peroxisome, plastid	32.19	54.18
EES00570	Sorghum	nucleus	53.05	46.44
VIT_06s0009g01200.t01	Wine grape	nucleus	53.18	45.78
PGSC0003DMT400058471	Potato	nucleus	52.93	45.76
Solyc01g008960.2.1	Tomato	nucleus	52.93	45.76
PGSC0003DMT400069459	Potato	nucleus	53.05	45.67
Solyc06g073540.2.1	Tomato	nucleus	53.05	45.67
GSMUA_Achr9P05150_001	Banana	nucleus	52.93	45.46
TraesCS1B01G480100.1	Wheat	nucleus	53.56	45.42
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	54.07	45.02
KRH14678	Soybean	nucleus	51.78	44.92
KRH73469	Soybean	nucleus	51.65	44.81
Solyc06g073530.1.1	Tomato	nucleus	51.02	44.36
Solyc01g096750.1.1	Tomato	nucleus	49.62	44.27
VIT_08s0040g00070.t01	Wine grape	nucleus	51.4	44.01
CDY48192	Canola	nucleus	51.53	43.93
Bra034318.1-P	Field mustard	nucleus	51.53	43.93
CDX77061	Canola	nucleus	51.27	43.71
TraesCS7B01G450300.1	Wheat	nucleus	51.02	43.63
AT2G27040.1	Thale cress	nucleus	51.15	43.51
CDY04475	Canola	nucleus	51.02	43.45
CDY56413	Canola	nucleus	50.76	43.23
CDY09103	Canola	nucleus	49.75	43.16
Bra020152.1-P	Field mustard	nucleus	49.75	43.16
KRG89867	Soybean	nucleus	51.91	43.08
VIT_13s0175g00140.t01	Wine grape	nucleus	48.47	43.05
AT5G21150.1	Thale cress	nucleus	48.35	42.41
TraesCS7B01G450200.2	Wheat	nucleus	49.36	41.9
CDX92417	Canola	nucleus	34.22	41.77
Bra002361.1-P	Field mustard	nucleus	48.35	41.71
CDX92406	Canola	nucleus	47.71	41.48
CDY16587	Canola	nucleus	46.44	41.38
CDY59516	Canola	nucleus	47.58	41.28
CDX92405	Canola	nucleus	47.96	41.2
TraesCS5B01G162300.1	Wheat	mitochondrion	46.82	40.98
KRH56276	Soybean	cytosol	43.26	40.91
AT5G21030.2	Thale cress	cytosol	43.77	40.28
Bra002360.1-P	Field mustard	nucleus	47.46	40.11
CDY16595	Canola	nucleus	43.13	36.85
Solyc03g111760.2.1	Tomato	mitochondrion	39.31	33.73
PGSC0003DMT400070806	Potato	nucleus	12.47	33.56
CDY72062	Canola	plastid	12.09	31.99
TraesCS5B01G454200.1	Wheat	cytosol	26.34	30.67
CDY62055	Canola	nucleus	22.14	30.21
TraesCS3B01G135800.1	Wheat	cytosol	31.3	29.25
TraesCS6B01G206700.1	Wheat	plastid	32.06	26.58
TraesCS5B01G468000.1	Wheat	plastid	29.39	26.46
TraesCS7B01G256500.1	Wheat	cytosol	32.06	26.36
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	27.1	25.09
TraesCS3B01G287600.1	Wheat	nucleus	28.88	25.06
TraesCS5B01G452500.1	Wheat	nucleus	28.88	24.89
TraesCS7B01G482100.1	Wheat	nucleus	32.57	24.81
TraesCS6B01G466700.1	Wheat	nucleus	31.93	24.78
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	30.15	24.06
TraesCS4B01G024000.1	Wheat	nucleus	31.17	23.93
TraesCS2B01G421000.2	Wheat	nucleus	33.33	23.77
TraesCS6B01G270900.1	Wheat	nucleus	32.57	23.59
TraesCS2B01G195200.2	Wheat	nucleus	29.9	23.31
TraesCS5B01G451400.2	Wheat	plastid	30.66	22.74
TraesCS4B01G026600.1	Wheat	cytosol	13.87	22.47
Bra002349.1-P	Field mustard	nucleus	46.06	21.28
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	20.48	20.05
TraesCS2B01G439000.2	Wheat	nucleus, unclear	25.06	18.83
TraesCS2B01G434000.1	Wheat	nucleus	24.81	18.57
TraesCS5B01G458100.1	Wheat	cytosol	22.14	18.32
TraesCS2B01G438200.1	Wheat	nucleus	22.14	16.28
PGSC0003DMT400039204	Potato	cytosol	2.54	13.33
TraesCS3B01G027100.1	Wheat	cytosol	2.04	10.46

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF20	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7B01G373400	EnsemblPlants:TraesCS7B01G373400.1	TIGR:cd02846	SEG:seg

Description

No Description!

Coordinates

chr7B:-:639086798..639091157

Molecular Weight (calculated)

88405.4 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.515

Length

786 amino acids

Sequence
(BLAST)

001: MESQAQSSKG DSSKSPMPHG GEGDEPGKDD SSKSPMLHRG KGDEPSKAPP TPQMLPITRP PKPGTRGRRI TLLTNHFKAS WKPAHDFFYH YHVDLKYADG
101: QPAAGERVGR KVMRQLYETY ASDLAGKQFA YDGETGLYTA GPLPFTTNVF EVILVDASSR RIAATSGSHG GDGSPGPSDN KRMKTEAHSK IFKVEITFAA
201: KVRMNNSSQD ALRVLDIILR QHSAKQNCLL VRQSFFRGDS RYLELGGGVR GCQGFYSSFR PTLSGLSLNV DLTTTMVVRP GPVIDFLLFN QDVKDTSRID
301: WRKAKRALNK LRIETIHTKA EFMITGLTEN NCNEQTFPQK QKDGNTVDVT VYDHFMNRWS MKMEKSANLP CLIAGKPMRP TYLPLEVCIL LPLQRYKKSL
401: STLQRSKLVE GSRQRPDQRM LSLSGALRAN NYNSDPMLRE CGIAIDPEFT QVEGRVLQAP QLNSADGREL RTPNGRWNFN NDRFIQPIKV KMWGVVNFSA
501: RYNVEDLVSR LVQSGAKKGI EMAKCGAVIE ESHQTRREPP TKRVEAMFEQ IKAKLKRKPD FLFLLCVLPE KNSDIYGPWK RECLVKHGFF TQCLVPPANI
601: KDQYLTNVLL KINAKLGGLN SLLKKETIRA IPHVSRVPTI IFGMDVSHGS PGQNVPSVAA VVSSLKWPIM SKYRASVCTQ SPRLEMIDTL FKPVGDDDHG
701: LIKDSLVDFL RNNDGQRPEQ IIIFRDGVSE SQFNQALNEE LAQIMEACKF FGGKHFNGNW FPKFTLIVAQ KNHHTRFFSR NGQRPK

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.