Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G151900.1 | Wheat | nucleus | 80.54 | 65.86 |
| Zm00001d053872_P021 | Maize | nucleus | 64.53 | 52.74 |
| OQU84386 | Sorghum | nucleus | 65.35 | 51.66 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 29.32 | 46.89 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 39.67 | 44.1 |
| Solyc01g096390.2.1 | Tomato | nucleus | 42.18 | 40.05 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 34.65 | 35.84 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 33.65 | 34.94 |
| KRH20723 | Soybean | nucleus | 42.94 | 33.86 |
| CDY60335 | Canola | nucleus | 39.42 | 33.6 |
| KRH13386 | Soybean | nucleus | 43.25 | 33.09 |
| AT2G40030.1 | Thale cress | nucleus | 40.99 | 33.05 |
| Bra000162.1-P | Field mustard | nucleus | 40.49 | 31.33 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 18.2 | 20.32 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 10.36 | 19.01 |
| CDY07630 | Canola | nucleus | 26.55 | 18.46 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 13.81 | 15.74 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 17.83 | 15.63 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 18.08 | 15.55 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 18.14 | 15.55 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 17.64 | 15.42 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 13.5 | 15.41 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 13.56 | 12.97 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS6B01G094400 | EnsemblPlants:TraesCS6B01G094400.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:+:70722035..70753311
Molecular Weight (calculated)
175821.0 Da
IEP (calculated)
6.114
GRAVY (calculated)
-0.369
Length
1593 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQFIEIKMPS SIPSLSYYDQ YHHDRTYSTN DYPVTQPKQL RDSFLGLPLE TGECNSCGAS ENGKCEGHFG YIELPVPVYH PCHVSELRQL LSLLCLKCLG
0101: IKKGKCHCFC FQSVNGFLLY SLSCCAFNIL KKIPDDTRKK LAARGYIAQS GYVMKYLPVP PNCLYNPEFT DGQSIKSNAI SISLLGKILE KIEKIKESAS
0201: GSPHFESYDT ESAELQFSIG QYIQARGTTK GPQGAKRFTT STDSSPSSTK EWLEKMKTLF ISKVSGFSSL SVLTGDPYIG ADVVGLPFEV AKRITFEEPV
0301: TDINIHRLQE VVDKGLCLTY RDGQATYAIN VGSKGSPTLK VGQTISKRIV DGDVVFLNRS PSTHKHSLQA LNVYIHHGHT VKINPLLCYP YGADFDGDCV
0401: LIFYPQSQSA KIEALELFSV EKQLSSSHSG RLNLPLTNDS LLALKLMSSR TMLSKESANQ LAIALPPELT CEGDSTVIDL EKEFVEASFS DLVSNIICVK
0501: GPGDALKFLN ALQPLFMEFL LLDGFSLTLQ DFSVPKLLLE GAQECIKEQS SVLEQSRRCF KSHSVDYNLK NIKEKISNFV VKSSRLGLLF DPKSDPSMSK
0601: VVEQLGFVGL QLYREGKLYS RRLVESCFSN FVNRHPPIGD GIQHPPEAYG LVQSSYFHGL NPYEELVHAI STRETIVRSS RGLPEAGTLF KGLMAILRDV
0701: VICYDGTVGN IYSNSIMQLK YKEDPSAITP GEPVGALAAA AISNPAYKAV LGASHSNNTS WVLMKEILQT KVSYKNDAKD RKVILFLNDC SCPKKFCKEK
0801: AAIAVQGCLK RVTLEDCTTD ICIEYQKQVS LKGTSEATPA FVGHIHLEKE HLEQINVSTD DILQKCQEVS GKHGNKKGTL GLLFKNISFS TCDCSFTRKL
0901: SDGKASCLQF SFLEYIPMLS DSVEKAVNVL TDSLCSVLLE TVIKGDPRIQ DAKIMWVGSD ATPWVKDTKK VSNGEPAVEI IVEKKEARKN GDAWRIAMDA
1001: CIPVINLIDT RRSIPHGIRE VRELLGISCT FDQVVQCLSR TMNTVAKGIL KDHLILVANS MTCTGNLNGF HKGGYNATLR SLKVQAPFTQ STFTPVKCLE
1101: KAAEKCHTDS LGCVVSSCSW GKSAALGTGS SFQILWNENQ LKSNKEYGDG LYDFLALVRT DQEKDAYTFL DDVDYLVEDN MMDDICLSPE WDGTHGMPTF
1201: EDNPEQEITE KSNSWENDTT ANASWEQNVI AWNDSGNAQN VDAQDDPLGS VAAKAQNSSA QHMDGKNDSW GCVAAKTCTA EPMDAGDDSW GSVTAKAQTC
1301: AAQEDSWGNV SASPSDNAWG AAQISQGHEN SDSKQPDSWD GWSSAQTDDS SADNWKTNSS GNNKGWKSEG WDAKENRRDK RDNPGRPPMR PVERPPRPRY
1401: ELPAEAKKVL REIEPIVTMV RKIFRESCDG VRLPLEDEKF IIEKVLEHHP EKEKKVSGGI DHIMVNKHHI FRQSRCFYVV SSDGTHTDFS YNKCMDNYVR
1501: KNYAEHAELI CGMHFKKCNR DQPPAVDGGA APATEAKASQ STNPGEDTLP GPPAGTSASL TMITQEETPA FPAATPDDTL TQQEAGAVDD KWV
0101: IKKGKCHCFC FQSVNGFLLY SLSCCAFNIL KKIPDDTRKK LAARGYIAQS GYVMKYLPVP PNCLYNPEFT DGQSIKSNAI SISLLGKILE KIEKIKESAS
0201: GSPHFESYDT ESAELQFSIG QYIQARGTTK GPQGAKRFTT STDSSPSSTK EWLEKMKTLF ISKVSGFSSL SVLTGDPYIG ADVVGLPFEV AKRITFEEPV
0301: TDINIHRLQE VVDKGLCLTY RDGQATYAIN VGSKGSPTLK VGQTISKRIV DGDVVFLNRS PSTHKHSLQA LNVYIHHGHT VKINPLLCYP YGADFDGDCV
0401: LIFYPQSQSA KIEALELFSV EKQLSSSHSG RLNLPLTNDS LLALKLMSSR TMLSKESANQ LAIALPPELT CEGDSTVIDL EKEFVEASFS DLVSNIICVK
0501: GPGDALKFLN ALQPLFMEFL LLDGFSLTLQ DFSVPKLLLE GAQECIKEQS SVLEQSRRCF KSHSVDYNLK NIKEKISNFV VKSSRLGLLF DPKSDPSMSK
0601: VVEQLGFVGL QLYREGKLYS RRLVESCFSN FVNRHPPIGD GIQHPPEAYG LVQSSYFHGL NPYEELVHAI STRETIVRSS RGLPEAGTLF KGLMAILRDV
0701: VICYDGTVGN IYSNSIMQLK YKEDPSAITP GEPVGALAAA AISNPAYKAV LGASHSNNTS WVLMKEILQT KVSYKNDAKD RKVILFLNDC SCPKKFCKEK
0801: AAIAVQGCLK RVTLEDCTTD ICIEYQKQVS LKGTSEATPA FVGHIHLEKE HLEQINVSTD DILQKCQEVS GKHGNKKGTL GLLFKNISFS TCDCSFTRKL
0901: SDGKASCLQF SFLEYIPMLS DSVEKAVNVL TDSLCSVLLE TVIKGDPRIQ DAKIMWVGSD ATPWVKDTKK VSNGEPAVEI IVEKKEARKN GDAWRIAMDA
1001: CIPVINLIDT RRSIPHGIRE VRELLGISCT FDQVVQCLSR TMNTVAKGIL KDHLILVANS MTCTGNLNGF HKGGYNATLR SLKVQAPFTQ STFTPVKCLE
1101: KAAEKCHTDS LGCVVSSCSW GKSAALGTGS SFQILWNENQ LKSNKEYGDG LYDFLALVRT DQEKDAYTFL DDVDYLVEDN MMDDICLSPE WDGTHGMPTF
1201: EDNPEQEITE KSNSWENDTT ANASWEQNVI AWNDSGNAQN VDAQDDPLGS VAAKAQNSSA QHMDGKNDSW GCVAAKTCTA EPMDAGDDSW GSVTAKAQTC
1301: AAQEDSWGNV SASPSDNAWG AAQISQGHEN SDSKQPDSWD GWSSAQTDDS SADNWKTNSS GNNKGWKSEG WDAKENRRDK RDNPGRPPMR PVERPPRPRY
1401: ELPAEAKKVL REIEPIVTMV RKIFRESCDG VRLPLEDEKF IIEKVLEHHP EKEKKVSGGI DHIMVNKHHI FRQSRCFYVV SSDGTHTDFS YNKCMDNYVR
1501: KNYAEHAELI CGMHFKKCNR DQPPAVDGGA APATEAKASQ STNPGEDTLP GPPAGTSASL TMITQEETPA FPAATPDDTL TQQEAGAVDD KWV
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.