Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G498900.1 | Wheat | nucleus | 96.76 | 95.45 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 43.63 | 92.01 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 88.58 | 88.83 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 87.21 | 85.8 |
| Zm00001d024583_P003 | Maize | nucleus | 85.62 | 84.32 |
| EES13372 | Sorghum | nucleus | 85.35 | 83.74 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 85.18 | 83.49 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 51.15 | 83.07 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 38.64 | 81.11 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.69 | 80.68 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 7.3 | 80.61 |
| KRH28855 | Soybean | nucleus | 80.79 | 80.57 |
| KRH76591 | Soybean | nucleus | 80.79 | 80.57 |
| PGSC0003DMT400009249 | Potato | nucleus | 80.57 | 79.83 |
| Solyc02g083350.2.1 | Tomato | nucleus | 80.85 | 79.79 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 20.86 | 79.33 |
| KRH40807 | Soybean | nucleus | 76.89 | 79.06 |
| Bra010510.1-P | Field mustard | nucleus | 78.92 | 78.84 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 60.92 | 78.84 |
| AT4G35800.1 | Thale cress | nucleus | 79.25 | 78.52 |
| CDY08876 | Canola | nucleus | 66.52 | 74.86 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.48 | 71.76 |
| CDY71816 | Canola | cytosol | 10.59 | 67.72 |
| Bra011638.1-P | Field mustard | nucleus | 77.72 | 52.27 |
| CDX75527 | Canola | nucleus | 76.13 | 51.07 |
| CDX69166 | Canola | cytosol | 73.93 | 51.02 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 25.3 | 33.05 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 25.19 | 32.83 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 21.02 | 22.99 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 14.27 | 18.22 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 15.42 | 17.64 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 13.83 | 16.36 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 13.39 | 15.91 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 16.74 | 15.66 |
Protein Annotations
Description
No Description!
Coordinates
chr5B:-:665560873..665568060
Molecular Weight (calculated)
203240.0 Da
IEP (calculated)
6.109
GRAVY (calculated)
-0.473
Length
1822 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSVAVIEHAE TMEKGKPKPG GLSDPRLGTI DRRTKCETCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS IMRCVCFNCS KILADADDEN DGKFRQALRI
0101: KNPKNRLRKI QEACKGKKVC AAGEDDLEGQ DQMDSDEPVK KKRGGCGAQQ PKITVDGMKM VAEFKATNKK NVDQDQLPEP VERKQILSAD RVLNVLKRIS
0201: DEDCLLLGLD PKYARPDWMI LQVLPIPPPP VRPSVMMDTS SRSEDDLTHQ LAMIIRHNEN LRRQERNGVP AHIITEFAQL LQFHIATYFD NDLPGQPRAT
0301: QRSGRPIKSI CSRLKAKEGR VRGNLMGKRV DFSARTVITP DPNINIDELG VPWSIALNLT YPETVTPYNI ERLKELVENG PHPPPGKTGA KYIIREDGQR
0401: LDLRYVKKSS DQHLELGYKV ERHLIDGDFV LFNRQPSLHK MSIMGHRIKI MPYSTFRLNL SVTSPYNADF DGDEMNMHVP QSFEARAEVL ELMMVPKCIV
0501: SPQANRPVMG IVQDTLLGCR KITKRDTLIE KDVFMNILMW WEDFDGKVPA PAILKPRPIW TGKQVFNLII PKRINLIRFS AWHDEGESRF ITPGDTVVRI
0601: EKGELLSGIL CKKTLGTSMG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL LQHGFSIGIG DTIADAGTMK KISDTISKAQ DDVTELIKEA RDNKLEPEPG
0701: RTMMESFENK VNQVLNKARD DSGSSAQQSL SESNNLKAMV TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF GFAGRTLPHF TQNDDSPESR GFVKNSYLRG
0801: LTPEEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR NSLGDVIQFL YGEDGMDAVW IEPQKLDSLG MKRAEFDNVF RYELDDENWR
0901: PTYMSPEDAD VLKTVPDIRL VFEAEFQKLE ADRLQLGTEI ATTGDITWPM PVNLKRLIWN AQKTFKIDLR RPSDMHPMEI VEAMDKLQER LKVVHGDDAM
1001: STEAQKNSTL LFNILLRSTF ASKRVLKEYR LTRESFEWVI GEIESRFHQS LVAPGEMIGC VAAQSIGEPA TQMTLNTFHY AGVSAKNVTL GVPRLREIIN
1101: VAKKIKTPSL SVFLKPEVSK KKELAKNVQC ALEYTTLRSV THATEIWYDP DPLGTTIEED VEFVKSYYEM PDEDIDPDKL SPWLLRIELN REMMVDKRLS
1201: MAEIAEKIKH EFDDDLSCIF NDDNADKLIL RIRIKNDDEA PKQDEDDDVF LKKIESNMLT EMTLGGIPDI NKVFIKERKV NKFDENDGFT QKSDNKDKNK
1301: EWMLDTEGVN LLAVMCHEDV DATRTTSNHL IEVIEVLGIE AVRRSLLDEL RAVISFDGSY VNYRHLAILC DTMTYRGHLM AITRHGINRN DTGPLMRCSF
1401: EETVDILLDA AMYAESDHLR GVTENIMLGQ LAPIGTGGCE LYLNDKMLEQ AIELQLPSFV DGLDYGMTPA PSPISRMMSP VPSPNSRASP VTDHALQFSP
1501: YVGGMAFSPV PSNYSTSSGP GGHGYSPVSP VYSPLSPIYT PTSLSYSPIS PIYSPESPVY SPASPVLRPT SLQYSPTSPV YSPTSLEYSP TSPVYSRTSL
1601: PYSPTSPSYS PTSHAYSPTS PSYSPTSHAY SPTSPSYNPT SPVYSPASFS YSPTSPYYNP TSPSYSPTSH SYSPTSPRYS PTSPSCSPTS PNYSPTSPAY
1701: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP SSAYSPSSPM MMSPYSQLPT NYSLASPTYS PTSPSYAAQP SPSYSPTSPC TASGGPSPDY SLTSPNYSPS
1801: TSYSPPSTKP QTSDKDDNKS AP
0101: KNPKNRLRKI QEACKGKKVC AAGEDDLEGQ DQMDSDEPVK KKRGGCGAQQ PKITVDGMKM VAEFKATNKK NVDQDQLPEP VERKQILSAD RVLNVLKRIS
0201: DEDCLLLGLD PKYARPDWMI LQVLPIPPPP VRPSVMMDTS SRSEDDLTHQ LAMIIRHNEN LRRQERNGVP AHIITEFAQL LQFHIATYFD NDLPGQPRAT
0301: QRSGRPIKSI CSRLKAKEGR VRGNLMGKRV DFSARTVITP DPNINIDELG VPWSIALNLT YPETVTPYNI ERLKELVENG PHPPPGKTGA KYIIREDGQR
0401: LDLRYVKKSS DQHLELGYKV ERHLIDGDFV LFNRQPSLHK MSIMGHRIKI MPYSTFRLNL SVTSPYNADF DGDEMNMHVP QSFEARAEVL ELMMVPKCIV
0501: SPQANRPVMG IVQDTLLGCR KITKRDTLIE KDVFMNILMW WEDFDGKVPA PAILKPRPIW TGKQVFNLII PKRINLIRFS AWHDEGESRF ITPGDTVVRI
0601: EKGELLSGIL CKKTLGTSMG SLIHVIWEEV GPDAARKFLG HTQWLVNYWL LQHGFSIGIG DTIADAGTMK KISDTISKAQ DDVTELIKEA RDNKLEPEPG
0701: RTMMESFENK VNQVLNKARD DSGSSAQQSL SESNNLKAMV TAGSKGSFIN ISQMTACVGQ QNVEGKRIPF GFAGRTLPHF TQNDDSPESR GFVKNSYLRG
0801: LTPEEFFFHA MGGREGLIDT AVKTSETGYI QRRLVKAMED IMVKYDGTVR NSLGDVIQFL YGEDGMDAVW IEPQKLDSLG MKRAEFDNVF RYELDDENWR
0901: PTYMSPEDAD VLKTVPDIRL VFEAEFQKLE ADRLQLGTEI ATTGDITWPM PVNLKRLIWN AQKTFKIDLR RPSDMHPMEI VEAMDKLQER LKVVHGDDAM
1001: STEAQKNSTL LFNILLRSTF ASKRVLKEYR LTRESFEWVI GEIESRFHQS LVAPGEMIGC VAAQSIGEPA TQMTLNTFHY AGVSAKNVTL GVPRLREIIN
1101: VAKKIKTPSL SVFLKPEVSK KKELAKNVQC ALEYTTLRSV THATEIWYDP DPLGTTIEED VEFVKSYYEM PDEDIDPDKL SPWLLRIELN REMMVDKRLS
1201: MAEIAEKIKH EFDDDLSCIF NDDNADKLIL RIRIKNDDEA PKQDEDDDVF LKKIESNMLT EMTLGGIPDI NKVFIKERKV NKFDENDGFT QKSDNKDKNK
1301: EWMLDTEGVN LLAVMCHEDV DATRTTSNHL IEVIEVLGIE AVRRSLLDEL RAVISFDGSY VNYRHLAILC DTMTYRGHLM AITRHGINRN DTGPLMRCSF
1401: EETVDILLDA AMYAESDHLR GVTENIMLGQ LAPIGTGGCE LYLNDKMLEQ AIELQLPSFV DGLDYGMTPA PSPISRMMSP VPSPNSRASP VTDHALQFSP
1501: YVGGMAFSPV PSNYSTSSGP GGHGYSPVSP VYSPLSPIYT PTSLSYSPIS PIYSPESPVY SPASPVLRPT SLQYSPTSPV YSPTSLEYSP TSPVYSRTSL
1601: PYSPTSPSYS PTSHAYSPTS PSYSPTSHAY SPTSPSYNPT SPVYSPASFS YSPTSPYYNP TSPSYSPTSH SYSPTSPRYS PTSPSCSPTS PNYSPTSPAY
1701: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP SSAYSPSSPM MMSPYSQLPT NYSLASPTYS PTSPSYAAQP SPSYSPTSPC TASGGPSPDY SLTSPNYSPS
1801: TSYSPPSTKP QTSDKDDNKS AP
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.