Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G420400.1 | Wheat | nucleus | 88.14 | 87.79 |
| TraesCS3D01G522400.1 | Wheat | plastid | 91.66 | 87.33 |
| TraesCS3A01G513100.1 | Wheat | plastid | 92.63 | 85.76 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 69.82 | 83.61 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 18.51 | 74.74 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 21.25 | 54.61 |
| KXG34194 | Sorghum | nucleus | 55.15 | 53.65 |
| Os02t0152800-01 | Rice | cytosol | 16.56 | 52.05 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 34.94 | 33.65 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 41.0 | 32.29 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 17.21 | 18.5 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 10.37 | 18.32 |
| Os02t0152700-01 | Rice | nucleus | 4.76 | 17.55 |
| Os02t0152600-01 | Rice | plasma membrane | 3.19 | 17.44 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 13.17 | 14.45 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 12.91 | 14.19 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 16.75 | 13.88 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 16.3 | 13.76 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 16.56 | 13.66 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 15.91 | 13.39 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 13.04 | 12.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 | Gene3D:3.10.450.40 |
| Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS3B01G581800 | EnsemblPlants:TraesCS3B01G581800.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:-:810274098..810284924
Molecular Weight (calculated)
169536.0 Da
IEP (calculated)
8.307
GRAVY (calculated)
-0.419
Length
1534 amino acids
Sequence
(BLAST)
(BLAST)
0001: METETAMEAG DDPAFVAEGT VTCIRLAVAS NQEIVRAQPM KEEFPVTHPS QLAGNPALGL PLQLGHCDSC GATDLAKCQG HFGFIKLPVS VYHPSHISEL
0101: TKILNMICFS CLQFKNSKIL TESFKGCCCD LPPIHVAKVK KSNGALTLEL RVPSRKELEE GFWSFLDQFG FHTKGSSHYR RLFAEEVQKI MEKISEKTRS
0201: QIAAKGYILQ DGFVMSNLPV PPNCLRAYNV LDETLMCSPD ASTNLLRKIV LNVHGINSSR VGPPTFQEHE VEADDLQVAI ADYIKHAGTA RGPQDITFKS
0301: LPATKQWQQK MKSLCISKSS SFSCRGVITG DPYIPMNVVG VPDEVARRMS VQERVTDYNI AQLQGMMDRG LCLTHEDANS ITHSLDVGKE NKKRTILKVG
0401: EPVNRRILDG DAVFVNRPPS TDKHSVQAMY VRVHTDHTIK INPLICGPLG ADFDGDCVHI FFPRSLSARA EAIELFTVEK QLVSSHNAKL NFQLKNDCLL
0501: ALKKMSARKY SRREANELLN AMFTAGLIPK KRLSGGPEWS FAQILETVLP QENKILIRDL VAGTITISSV LHRISKSSTA PTNGIITLDL DKLRKPIVDF
0601: ITSSDIRFLV DQKRDSAMTK VVEQIGFLGH QLQRNGRLYS GSLVEDCLSK SLSKCGSSTN GCHPLEAHGF VRNSFCNGLN PYEDLLHSIS AREKTIRASK
0701: GLVEPGVLFK NMMAMLRDVV ACYDGTIRNL CRNSVIKFDS TDSSSSVTPG DPVGILAATA VTNAAYKAVL DPNQNNMASW DSMKEVLLTR ASSRNENDQK
0801: IIMYLSKCSC GDNFCMERAS LAVQACLKRT EVEDCATEIS IHYQQQNIQP KHGLVGHIHL DKKQLDEMNI SMEGILQKCQ KEIYRCRKNK GQVNQLMKRV
0901: VISSECMCYQ DADDEEQVSC LQFFLTESVT TRMDESSARV VQLMANTISP ILLDTIIKGD PRVQEVNIIW VEPQDTCWVQ NSGIEQKGEL ALVITMDKNS
1001: TGESGDVWGT AMDACTPVMD LIDTTRSVPY SIQRVQEGFG ISSAFGRVTQ HLSKAVGMVT KSVLEEHLTT VASSMTCTGN LHGFNSYGYK ATFRSLKIQA
1101: PFMKATLASA GNENLGGYGL YEYLTEVETT RAAEDNMIVP YGSCLYDVDN LEEDGIEEDE VLCLGGNSPI TWTDRPKANL LLHDLQGWRA EQGHQKVPVA
1201: NGQHGKHVAT ESSGTSGWNQ RSSTTKVYQR RQRNSNWSSD ATQQDGNPSW NKAYVAGPSN FAITGPSSGA SGWNQSSSTT KVYKRRQFDS NWSSDATQQD
1301: GNPSWKKANV AGQGNFAITG PSSSGGWSRK TNNLARGRGG GRGAIWKSEG SHRGGNSRWK AQRANTTSAP NFQNSGPSNF GGRNIKTGNL GPCRGRGPAW
1401: RSNGPNRGGG NSGQRGSSNF TLAEQQIHAQ VDPIMKEVKR IIRESRDGIK LSGDNERFIV ENILMYHPEK EKKMAGNNNY IMVAKHQKFY SSRCLYVASS
1501: DGPPTDFSYK KCLENMIRIH YPRDASSFCR KYFQ
0101: TKILNMICFS CLQFKNSKIL TESFKGCCCD LPPIHVAKVK KSNGALTLEL RVPSRKELEE GFWSFLDQFG FHTKGSSHYR RLFAEEVQKI MEKISEKTRS
0201: QIAAKGYILQ DGFVMSNLPV PPNCLRAYNV LDETLMCSPD ASTNLLRKIV LNVHGINSSR VGPPTFQEHE VEADDLQVAI ADYIKHAGTA RGPQDITFKS
0301: LPATKQWQQK MKSLCISKSS SFSCRGVITG DPYIPMNVVG VPDEVARRMS VQERVTDYNI AQLQGMMDRG LCLTHEDANS ITHSLDVGKE NKKRTILKVG
0401: EPVNRRILDG DAVFVNRPPS TDKHSVQAMY VRVHTDHTIK INPLICGPLG ADFDGDCVHI FFPRSLSARA EAIELFTVEK QLVSSHNAKL NFQLKNDCLL
0501: ALKKMSARKY SRREANELLN AMFTAGLIPK KRLSGGPEWS FAQILETVLP QENKILIRDL VAGTITISSV LHRISKSSTA PTNGIITLDL DKLRKPIVDF
0601: ITSSDIRFLV DQKRDSAMTK VVEQIGFLGH QLQRNGRLYS GSLVEDCLSK SLSKCGSSTN GCHPLEAHGF VRNSFCNGLN PYEDLLHSIS AREKTIRASK
0701: GLVEPGVLFK NMMAMLRDVV ACYDGTIRNL CRNSVIKFDS TDSSSSVTPG DPVGILAATA VTNAAYKAVL DPNQNNMASW DSMKEVLLTR ASSRNENDQK
0801: IIMYLSKCSC GDNFCMERAS LAVQACLKRT EVEDCATEIS IHYQQQNIQP KHGLVGHIHL DKKQLDEMNI SMEGILQKCQ KEIYRCRKNK GQVNQLMKRV
0901: VISSECMCYQ DADDEEQVSC LQFFLTESVT TRMDESSARV VQLMANTISP ILLDTIIKGD PRVQEVNIIW VEPQDTCWVQ NSGIEQKGEL ALVITMDKNS
1001: TGESGDVWGT AMDACTPVMD LIDTTRSVPY SIQRVQEGFG ISSAFGRVTQ HLSKAVGMVT KSVLEEHLTT VASSMTCTGN LHGFNSYGYK ATFRSLKIQA
1101: PFMKATLASA GNENLGGYGL YEYLTEVETT RAAEDNMIVP YGSCLYDVDN LEEDGIEEDE VLCLGGNSPI TWTDRPKANL LLHDLQGWRA EQGHQKVPVA
1201: NGQHGKHVAT ESSGTSGWNQ RSSTTKVYQR RQRNSNWSSD ATQQDGNPSW NKAYVAGPSN FAITGPSSGA SGWNQSSSTT KVYKRRQFDS NWSSDATQQD
1301: GNPSWKKANV AGQGNFAITG PSSSGGWSRK TNNLARGRGG GRGAIWKSEG SHRGGNSRWK AQRANTTSAP NFQNSGPSNF GGRNIKTGNL GPCRGRGPAW
1401: RSNGPNRGGG NSGQRGSSNF TLAEQQIHAQ VDPIMKEVKR IIRESRDGIK LSGDNERFIV ENILMYHPEK EKKMAGNNNY IMVAKHQKFY SSRCLYVASS
1501: DGPPTDFSYK KCLENMIRIH YPRDASSFCR KYFQ
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.