Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G182500.1 | Wheat | cytosol | 95.39 | 95.39 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 93.55 | 93.23 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 90.78 | 86.59 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 44.12 | 79.96 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.27 | 76.52 |
| CDY71816 | Canola | cytosol | 23.04 | 70.18 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 30.76 | 67.94 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 70.85 | 43.68 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 90.78 | 42.55 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 87.56 | 40.88 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 84.45 | 40.34 |
| KRH40807 | Soybean | nucleus | 80.07 | 39.22 |
| KRH28855 | Soybean | nucleus | 82.14 | 39.03 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.6 | 38.99 |
| Solyc02g083350.2.1 | Tomato | nucleus | 82.72 | 38.89 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 81.11 | 38.64 |
| KRH76591 | Soybean | nucleus | 81.22 | 38.59 |
| AT4G35800.1 | Thale cress | nucleus | 79.84 | 37.68 |
| Bra010510.1-P | Field mustard | nucleus | 78.92 | 37.55 |
| CDY08876 | Canola | nucleus | 61.18 | 32.8 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 37.9 | 29.32 |
| CDX69166 | Canola | cytosol | 79.15 | 26.02 |
| CDX75527 | Canola | nucleus | 78.11 | 24.96 |
| Bra011638.1-P | Field mustard | nucleus | 76.27 | 24.44 |
| TraesCS3B01G494500.1 | Wheat | nucleus | 34.68 | 21.58 |
| TraesCS1B01G134500.1 | Wheat | cytosol | 33.64 | 20.89 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 26.27 | 13.69 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 20.28 | 12.33 |
| TraesCS3B01G581800.1 | Wheat | nucleus | 18.32 | 10.37 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 19.01 | 10.36 |
| TraesCS5B01G420400.1 | Wheat | nucleus | 18.09 | 10.19 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 21.77 | 9.7 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.2.1 |
| Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | PFAM:PF00623 |
| PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF37 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS7B01G085700 | EnsemblPlants:TraesCS7B01G085700.1 | TIGR:cd02733 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:97867406..97870966
Molecular Weight (calculated)
96781.6 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.373
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARFPYSPA EVAKAQLLQF GILSPDEIRQ MSVAAIEHAE TMERGKAKPG GLGDPRLGTI EEKIKCDTCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
101: IMRCVCFNCS KILADEEDTK FKQALKISNP KNRLRRIYDA CKSKKTCAGG DELEVQDEQD TDEPVKKRGG CGAQQPSITV DGMKMVAEFE ATKKKTDDQD
201: QLPELVERKQ ILSAERVLNV LKRISHEDCL LLGLNPKCAR PDWMILQVLP IPPPHVRPSV TMDTSSSTED DLTRQLATII RHNENLRRQE RNGAPAHIIT
301: EFAQLLQFHI ATYFGDDLPG QPRGTQHSGR PIKSICSRLK AKEGWIRGNL MGKRVDFSAR TVVTPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
401: LVEYGPHPPP GKTGAKYIIR EDGQRVDLRY VKKSSDQHLQ LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPCST FRLNLSVTSP YNADFDADEM
501: NMHVPQSFET TAVVLELMMV SKCIVSPQAN IPAMGIVQDT LLGCRKITER DTLIEKDVFM NMLMWWEDFD GKVPAPAILK PRPIWTGKQV FNLIIPKLIN
601: SISFSAWHAE TECGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIRV IWEEAGPDAA LKFLGHTQSL VNYWLLQNGF SIGIGDAIAD ADTMEKIDET
701: IGTAKNDVKE LIKQAQEKNL EPEPGLTMME SFENRVNQIL SKAYDDAGSS AQKGLSESNN LKAMVTAGSN GSFTNISQMT ACLGQQKIEG KRIPFGFVDR
801: TLPHFTKDDY GPESRGFVGN SYLRGLTPQE FFFHAMVSRE GLIDAAVKTP RQYSVEAREG HGGHHGEI
101: IMRCVCFNCS KILADEEDTK FKQALKISNP KNRLRRIYDA CKSKKTCAGG DELEVQDEQD TDEPVKKRGG CGAQQPSITV DGMKMVAEFE ATKKKTDDQD
201: QLPELVERKQ ILSAERVLNV LKRISHEDCL LLGLNPKCAR PDWMILQVLP IPPPHVRPSV TMDTSSSTED DLTRQLATII RHNENLRRQE RNGAPAHIIT
301: EFAQLLQFHI ATYFGDDLPG QPRGTQHSGR PIKSICSRLK AKEGWIRGNL MGKRVDFSAR TVVTPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
401: LVEYGPHPPP GKTGAKYIIR EDGQRVDLRY VKKSSDQHLQ LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPCST FRLNLSVTSP YNADFDADEM
501: NMHVPQSFET TAVVLELMMV SKCIVSPQAN IPAMGIVQDT LLGCRKITER DTLIEKDVFM NMLMWWEDFD GKVPAPAILK PRPIWTGKQV FNLIIPKLIN
601: SISFSAWHAE TECGFITPGD TMVRIEKGEL LSGTLCKKTL GTSTGSLIRV IWEEAGPDAA LKFLGHTQSL VNYWLLQNGF SIGIGDAIAD ADTMEKIDET
701: IGTAKNDVKE LIKQAQEKNL EPEPGLTMME SFENRVNQIL SKAYDDAGSS AQKGLSESNN LKAMVTAGSN GSFTNISQMT ACLGQQKIEG KRIPFGFVDR
801: TLPHFTKDDY GPESRGFVGN SYLRGLTPQE FFFHAMVSRE GLIDAAVKTP RQYSVEAREG HGGHHGEI
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.