Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35800.1 | CDY28102 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | CDY50960 | AT1G49590.1 | 23524848 |
| AT4G35800.1 | CDY10512 | AT1G53720.1 | 16497658 |
| AT4G35800.1 | CDY72459 | AT1G53720.1 | 16497658 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71816 | Canola | cytosol | 15.57 | 88.42 |
| AT4G35800.1 | Thale cress | nucleus | 92.9 | 81.78 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 52.25 | 75.4 |
| VIT_18s0001g00860.t01 | Wine grape | nucleus | 84.37 | 73.76 |
| KRH28855 | Soybean | nucleus | 83.08 | 73.62 |
| KRH76591 | Soybean | nucleus | 83.01 | 73.56 |
| Solyc02g083350.2.1 | Tomato | nucleus | 83.32 | 73.08 |
| PGSC0003DMT400009249 | Potato | nucleus | 82.64 | 72.76 |
| KRH40807 | Soybean | nucleus | 78.01 | 71.28 |
| TraesCS7B01G202000.2 | Wheat | nucleus | 80.85 | 70.68 |
| Zm00001d024583_P003 | Maize | nucleus | 80.73 | 70.65 |
| EES13372 | Sorghum | nucleus | 80.79 | 70.44 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 80.79 | 70.36 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 80.79 | 70.36 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 78.88 | 68.92 |
| TraesCS2B01G622300.1 | Wheat | nucleus | 78.88 | 68.69 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 78.81 | 68.68 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 62.08 | 68.32 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 74.92 | 68.11 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 76.78 | 67.92 |
| TraesCS5B01G499000.1 | Wheat | nucleus | 75.85 | 67.58 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 79.0 | 67.56 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 76.59 | 67.14 |
| TraesCS5B01G498800.1 | Wheat | nucleus | 74.86 | 66.52 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 57.69 | 66.34 |
| Os05t0151000-00 | Rice | nucleus | 73.87 | 64.93 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 34.47 | 64.58 |
| EES08565 | Sorghum | nucleus | 74.49 | 64.22 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 18.41 | 62.21 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 32.86 | 61.29 |
| TraesCS7B01G085700.1 | Wheat | cytosol | 32.8 | 61.18 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 32.74 | 60.85 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 32.49 | 57.8 |
| CDX75527 | Canola | nucleus | 89.75 | 53.5 |
| CDX69166 | Canola | cytosol | 85.98 | 52.73 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 6.98 | 42.8 |
| CDY09230 | Canola | nucleus | 21.99 | 25.99 |
| CDY65464 | Canola | nucleus | 13.65 | 23.59 |
| CDY06084 | Canola | nucleus | 19.77 | 21.04 |
| CDX67702 | Canola | nucleus | 19.52 | 20.94 |
| CDX72007 | Canola | nucleus | 19.83 | 20.91 |
| CDX93859 | Canola | nucleus | 14.08 | 15.76 |
| CDY49206 | Canola | nucleus | 14.08 | 15.62 |
| CDY50743 | Canola | nucleus | 7.84 | 15.56 |
| CDY32191 | Canola | nucleus | 13.77 | 15.44 |
| CDY65462 | Canola | nucleus | 2.9 | 13.13 |
| CDY68589 | Canola | cytosol | 4.26 | 12.95 |
| CDY60335 | Canola | nucleus | 14.76 | 12.79 |
| CDY07630 | Canola | nucleus | 10.44 | 7.37 |
Protein Annotations
Description
BnaC08g11060DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078F649]
Coordinates
chrLK031990:-:70198..77392
Molecular Weight (calculated)
180714.0 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.468
Length
1619 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GHLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEDEHK FKQAMRIKNP KNRLKKILDA CKNKTKCEGG DEIDDVQTQQ DTDEPVKKPK ITIEGMKMIA EFKVTKKKSD ETDQLPEPSE
0201: RKQTLGADRV LSVLKRISDA DCQLLGFNPK YARPDWMILE VLPIPPPPDD LTHQLAMIIR HNENLKRQEK NGAPAHIISE FTKLLQLKEL VDYGPHPPPG
0301: KTGAKYIIRD DGQRLDLRYL EKSSDHHLEL GYKVERHLID GDFVLFNRQP SLHKMSIMGH RIRIMPYSTS PYNADFDGDE MNMHANRPVM GIVQDTLLGC
0401: RKITKRDTFI EKDVFMNTLM WWQDFDGKVP APAILKPRPL WPGKQVFNLI IPKQINLFRY SAWHSNAETG YITPGDTQVR IERGELLAGT LCKKTLGTGN
0501: GSLVHVIWEE VGPYAARKFL GHTQWLVNYW LLQNGFTIGI GDTIADSQTM EKINETISSA KTAVKDLIRQ FQEKKLDPEP GRTMTETFEN RVSQVLNKAR
0601: DDAGSSAQKS LAETNNLKAM GSGSHLDLMA GRYLISPKMT IDYGPESRGF VENSYLRGLT PQEFFFHAMG GREGLIDTAV KTSETGYIQR RLVKAMEDIM
0701: VKYDGTVRNS LGDVIQFLYG EDGMDAVWIE SQKLDSLKMK KAEFDRTFKY EIDDENWNPT YLSDEHLEDL KGIRELRDVF DAEYQKLEAD RFQLGTEIAT
0801: NGDSTWPLPV NIKRHIWNAQ KTFKIDLRKI SDMHPVEIVD AVDKLQERLL VVPGEDGLSV EAQKNATLFF NILLRSTLAS KRVLEEYKLS PPGEMIGCVA
0901: AQSIGEPATQ MTLNTFHYAG VSAKNVTLGV PRLREIINVA KRIKTPSLSV YLTPEASKSK EGAKTVQCAL EYTILRSVTQ ATEVWYDPDP MSTIIEEDFE
1001: FVRSYYEMPD EDVSPVKISS WLLRIELNRE MMVDKKLSMA DIAEKINLEF DDDLTCIFND DNAEKLILRI RIMNDEGAKG EAQDESAEDD VFLKKIESNM
1101: LTEMALRGIP DINKVFIKQV RKSKFDEDEG FKTSEEWMLD TEGVNLLAVM CHEDVDPKRT TSNHLIAIIE VLGIEAVRRA LLDELRVVIS FDGSYVNYRH
1201: LAILCDTMTY RGHLMAITQH GINRNDTGPL MRCSFEETVD ILLDAAAYAE TDCLRGVTEN IMLGQLAPIG TGDCELYLND EMLKNAIELQ LPSYMDGLEF
1301: GMTPARSPMS GTPYHESMMS PNYLLSPNMR LSPMSDAQFS PYVGGMAFSP SSSPGYSPSS PGYSPTSPGY SPTSPGYSPT SPGYSPTSPT YSPTSPGYSP
1401: TSPSYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPAYSPT SPAYSPTSPA YSPTSPSYSP TSPSYSPTSP SYSPTLPSYS PTSPAYSPTS
1501: PGYSPTSPSY SPTSPSYGPS DVSELQPSSY ISKLQPYITI LLTHISIVFT FKSYIQSQQS IGFLCPYSAG ASPDYSPSAG YSPTLPGYSP SSTGQYTPHE
1601: GDKNGKTGKD ASKDDKSNL
0101: IMRCVCFNCS KILADEDEHK FKQAMRIKNP KNRLKKILDA CKNKTKCEGG DEIDDVQTQQ DTDEPVKKPK ITIEGMKMIA EFKVTKKKSD ETDQLPEPSE
0201: RKQTLGADRV LSVLKRISDA DCQLLGFNPK YARPDWMILE VLPIPPPPDD LTHQLAMIIR HNENLKRQEK NGAPAHIISE FTKLLQLKEL VDYGPHPPPG
0301: KTGAKYIIRD DGQRLDLRYL EKSSDHHLEL GYKVERHLID GDFVLFNRQP SLHKMSIMGH RIRIMPYSTS PYNADFDGDE MNMHANRPVM GIVQDTLLGC
0401: RKITKRDTFI EKDVFMNTLM WWQDFDGKVP APAILKPRPL WPGKQVFNLI IPKQINLFRY SAWHSNAETG YITPGDTQVR IERGELLAGT LCKKTLGTGN
0501: GSLVHVIWEE VGPYAARKFL GHTQWLVNYW LLQNGFTIGI GDTIADSQTM EKINETISSA KTAVKDLIRQ FQEKKLDPEP GRTMTETFEN RVSQVLNKAR
0601: DDAGSSAQKS LAETNNLKAM GSGSHLDLMA GRYLISPKMT IDYGPESRGF VENSYLRGLT PQEFFFHAMG GREGLIDTAV KTSETGYIQR RLVKAMEDIM
0701: VKYDGTVRNS LGDVIQFLYG EDGMDAVWIE SQKLDSLKMK KAEFDRTFKY EIDDENWNPT YLSDEHLEDL KGIRELRDVF DAEYQKLEAD RFQLGTEIAT
0801: NGDSTWPLPV NIKRHIWNAQ KTFKIDLRKI SDMHPVEIVD AVDKLQERLL VVPGEDGLSV EAQKNATLFF NILLRSTLAS KRVLEEYKLS PPGEMIGCVA
0901: AQSIGEPATQ MTLNTFHYAG VSAKNVTLGV PRLREIINVA KRIKTPSLSV YLTPEASKSK EGAKTVQCAL EYTILRSVTQ ATEVWYDPDP MSTIIEEDFE
1001: FVRSYYEMPD EDVSPVKISS WLLRIELNRE MMVDKKLSMA DIAEKINLEF DDDLTCIFND DNAEKLILRI RIMNDEGAKG EAQDESAEDD VFLKKIESNM
1101: LTEMALRGIP DINKVFIKQV RKSKFDEDEG FKTSEEWMLD TEGVNLLAVM CHEDVDPKRT TSNHLIAIIE VLGIEAVRRA LLDELRVVIS FDGSYVNYRH
1201: LAILCDTMTY RGHLMAITQH GINRNDTGPL MRCSFEETVD ILLDAAAYAE TDCLRGVTEN IMLGQLAPIG TGDCELYLND EMLKNAIELQ LPSYMDGLEF
1301: GMTPARSPMS GTPYHESMMS PNYLLSPNMR LSPMSDAQFS PYVGGMAFSP SSSPGYSPSS PGYSPTSPGY SPTSPGYSPT SPGYSPTSPT YSPTSPGYSP
1401: TSPSYSPTSP SYSPTSPSYS PTSPSYSPTS PSYSPTSPSY SPTSPAYSPT SPAYSPTSPA YSPTSPSYSP TSPSYSPTSP SYSPTLPSYS PTSPAYSPTS
1501: PGYSPTSPSY SPTSPSYGPS DVSELQPSSY ISKLQPYITI LLTHISIVFT FKSYIQSQQS IGFLCPYSAG ASPDYSPSAG YSPTLPGYSP SSTGQYTPHE
1601: GDKNGKTGKD ASKDDKSNL
0001: MDTRFPFSPA EVSKVRVVQF GILSPDEIRQ MSVIHVEHSE TTEKGKPKVG GLSDTRLGTI DRKVKCETCM ANMAECPGHF GYLELAKPMY HVGFMKTVLS
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
0101: IMRCVCFNCS KILADEEEHK FKQAMKIKNP KNRLKKILDA CKNKTKCDGG DDIDDVQSHS TDEPVKKSRG GCGAQQPKLT IEGMKMIAEY KIQRKKNDEP
0201: DQLPEPAERK QTLGADRVLS VLKRISDADC QLLGFNPKFA RPDWMILEVL PIPPPPVRPS VMMDATSRSE DDLTHQLAMI IRHNENLKRQ EKNGAPAHII
0301: SEFTQLLQFH IATYFDNELP GQPRATQKSG RPIKSICSRL KAKEGRIRGN LMGKRVDFSA RTVITPDPTI NIDELGVPWS IALNLTYPET VTPYNIERLK
0401: ELVDYGPHPP PGKTGAKYII RDDGQRLDLR YLKKSSDQHL ELGYKVERHL QDGDFVLFNR QPSLHKMSIM GHRIRIMPYS TFRLNLSVTS PYNADFDGDE
0501: MNMHVPQSFE TRAEVLELMM VPKCIVSPQA NRPVMGIVQD TLLGCRKITK RDTFIEKDVF MNTLMWWEDF DGKVPAPAIL KPRPLWTGKQ VFNLIIPKQI
0601: NLLRYSAWHA DTETGFITPG DTQVRIERGE LLAGTLCKKT LGTSNGSLVH VIWEEVGPDA ARKFLGHTQW LVNYWLLQNG FTIGIGDTIA DSSTMEKINE
0701: TISNAKTAVK DLIRQFQGKE LDPEPGRTMR DTFENRVNQV LNKARDDAGS SAQKSLAETN NLKAMVTAGS KGSFINISQM TACVGQQNVE GKRIPFGFDG
0801: RTLPHFTKDD YGPESRGFVE NSYLRGLTPQ EFFFHAMGGR EGLIDTAVKT SETGYIQRRL VKAMEDIMVK YDGTVRNSLG DVIQFLYGED GMDAVWIESQ
0901: KLDSLKMKKS EFDRTFKYEI DDENWNPTYL SDEHLEDLKG IRELRDVFDA EYSKLETDRF QLGTEIATNG DSTWPLPVNI KRHIWNAQKT FKIDLRKISD
1001: MHPVEIVDAV DKLQERLLVV PGDDALSVEA QKNATLFFNI LLRSTLASKR VLEEYKLSRE AFEWVIGEIE SRFLQSLVAP GEMIGCVAAQ SIGEPATQMT
1101: LNTFHYAGVS AKNVTLGVPR LREIINVAKR IKTPSLSVYL TPEASKSKEG AKTVQCALEY TTLRSVTQAT EVWYDPDPMS TIIEEDFEFV RSYYEMPDED
1201: VSPDKISPWL LRIELNREMM VDKKLSMADI AEKINLEFDD DLTCIFNDDN AQKLILRIRI MNDEGPKGEL QDESAEDDVF LKKIESNMLT EMALRGIPDI
1301: NKVFIKQVRK SRFDEEGGFK TSEEWMLDTE GVNLLAVMCH EDVDPKRTTS NHLIEIIEVL GIEAVRRALL DELRVVISFD GSYVNYRHLA ILCDTMTYRG
1401: HLMAITRHGI NRNDTGPLMR CSFEETVDIL LDAAAYAETD CLRGVTENIM LGQLAPIGTG DCELYLNDEM LKNAIELQLP SYMDGLEFGM TPARSPVSGT
1501: PYHEGMMSPN YLLSPNMRLS PMSDAQFSPY VGGMAFSPSS SPGYSPSSPG YSPTSPGYSP TSPGYSPTSP GYSPTSPTYS PSSPGYSPTS PAYSPTSPSY
1601: SPTSPSYSPT SPSYSPTSPS YSPTSPSYSP TSPSYSPTSP AYSPTSPAYS PTSPAYSPTS PSYSPTSPSY SPTSPSYSPT SPSYSPTSPS YSPTSPAYSP
1701: TSPGYSPTSP SYSPTSPSYG PTSPSYNPQS AKYSPSIAYS PSNARLSPAS PYSPTSPNYS PTSPSYSPTS PSYSPSSPTY SPSSPYSSGA SPDYSPSAGY
1801: SPTLPGYSPS STGQYTPHEG DKKDKTGKKD ASKDDKGNP
Arabidopsis Description
NRPB1DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.