Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28628250
|
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G622300.1 | Wheat | nucleus | 98.92 | 98.87 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 98.49 | 98.76 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 97.36 | 95.56 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 93.33 | 93.28 |
| Zm00001d024583_P003 | Maize | nucleus | 89.72 | 90.11 |
| EES13372 | Sorghum | nucleus | 89.83 | 89.88 |
| GSMUA_Achr1P14900_001 | Banana | nucleus | 53.12 | 87.97 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 40.69 | 86.8 |
| GSMUA_Achr1P14890_001 | Banana | cytosol | 22.34 | 86.64 |
| KRH28855 | Soybean | nucleus | 83.85 | 85.28 |
| KRH76591 | Soybean | nucleus | 83.85 | 85.28 |
| Solyc02g083350.2.1 | Tomato | nucleus | 84.45 | 84.99 |
| PGSC0003DMT400009249 | Potato | nucleus | 84.02 | 84.88 |
| KRH40807 | Soybean | nucleus | 80.19 | 84.09 |
| Bra010510.1-P | Field mustard | nucleus | 81.92 | 83.44 |
| AT4G35800.1 | Thale cress | nucleus | 82.56 | 83.41 |
| Solyc02g083230.2.1 | Tomato | cytosol, nucleus, peroxisome | 11.73 | 82.58 |
| GSMUA_Achr3P00590_001 | Banana | nucleus | 61.89 | 81.68 |
| CDY08876 | Canola | nucleus | 68.68 | 78.81 |
| VIT_00s0264g00080.t01 | Wine grape | cytosol | 6.94 | 78.18 |
| CDY71816 | Canola | cytosol | 11.73 | 76.49 |
| VIT_00s0264g00070.t01 | Wine grape | nucleus | 15.39 | 72.77 |
| Bra011638.1-P | Field mustard | nucleus | 78.69 | 53.97 |
| CDX69166 | Canola | cytosol | 76.21 | 53.64 |
| CDX75527 | Canola | nucleus | 78.09 | 53.42 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 25.35 | 33.76 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 12.97 | 33.61 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 11.89 | 31.89 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 20.61 | 23.14 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 14.05 | 18.32 |
| TraesCS3A01G513100.1 | Wheat | plastid | 15.02 | 16.84 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 17.06 | 16.19 |
Protein Annotations
Description
No Description!
Coordinates
chr2A:+:761532430..761540452
Molecular Weight (calculated)
206464.0 Da
IEP (calculated)
5.814
GRAVY (calculated)
-0.470
Length
1858 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDARFPHSPA EVAKVKLVQF GVLSPDEIRQ MSVVMIEHAE TTERGKVKSG GLSDPRLGTI DRKLKCDTCM AGMAECPGHF GHLELAKPMF HIGFIKTVLS
0101: VMRCVCFNCS KILADEEDTK FQQALKIKNP KNRLRRIYDA CKSKKVCSGG EDLEGQDQQD TEEPVKKKGG CGAQQPNITV DGMKMVAEFK TTKKKNDEQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPEFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKMTKR DTLIEKDVFM NILMWWEDFD GKVPAPTILK PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TENGFTTPGD TVVRIEKGEL LSGTLCKKTL GASSGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD ADTMEKINET
0701: IANAKIEVNG LIKQAQEKEL EPEPGRTMME SFENRVNQVL NKARDESGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKDE FDNVFRYELN DMNWKPNYML PDHVEDLKTI REFRNVFEAE LQKLEVDRLQ LGQEITTTGE GTWPMPVNLK RLIWNAQKTF KIDLRKPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLLFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVFLK PGVNSRKESA KNVQCALEYT TLRSVTHATE IWYDPDPLGT LIPEDVDFVR SYYEMPDEDV
1201: DPDKMSPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIA NDEAPPKGGE AQGESAEDDV FLKKIEGNML TEMALRGIPD
1301: INKVFIKKGK VNKFDEKEGF KGEEEWMLDT EGVNLLAVMC HEDVDPSRTT SNHLIEVIEV LGIEAVRRSL LDELRVVISF DGSYVNYRHL AILCDMMTYR
1401: GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAVYAES DYLRGVTENI MLGQLAPIGT GGCGLYLNDQ MLKQAIELQL PSYIDTLDYG VTPARSPSGT
1501: PYHDGMMSPL LSPNFRVSPL TDAQFSPYVG GMAFSPMPSN YSPSSGGYSP SSPVFSPGPG HSYSPTSPSY SPASPSYSPA SPSYTPGSPS YSPSSPSYSP
1601: TSPSYSPTSP SYSPTSPSYS PTSPAYCPTS PSYSPTSPAY CPTSPAYSPT SPAYCPTSPA YSPLSPSYNP TSPSYSPTSP SYSPTSPSYS PTSPSYSPTS
1701: PSYSPSSPTY SPTSPSYRPT SPSYSPTSPA YSPSSPGYCP TSPSYSPTSL SYSPSSAKYS PSNIYSPSSP RMMSPYSQTS PNYSPTSPSY SPTSPSYAQP
1801: SPSYSPASPI TTSGGPSPDY TPTSPNYSPT ASYSPTAPGY SPISTEPQTS DKDEETAP
0101: VMRCVCFNCS KILADEEDTK FQQALKIKNP KNRLRRIYDA CKSKKVCSGG EDLEGQDQQD TEEPVKKKGG CGAQQPNITV DGMKMVAEFK TTKKKNDEQD
0201: QLPEPVERKQ ILSAERVLNV LKRISDEDCL LLGLNPEFAR PDWMILQVLP IPPPPVRPSV MMDTSSRSED DLTHQLAMII RHNENLRRQE RNGAPAHIIT
0301: EFAQLLQFHI ATYFDNDLPG QPRATQRSGR PIKSICSRLK AKEGRIRGNL MGKRVDFSAR TVITPDPNIN IDQLGVPWSI ALNLTYPETV TPYNIERLKE
0401: LVEYGPHPPP GKTGAKYIIR EDGQRLDLRY VKKSSDQHLE LGYKVERHLN DGDFVLFNRQ PSLHKMSIMG HRIKIMPYST FRLNLSVTSP YNADFDGDEM
0501: NMHVPQSFET RAEVLELMMV PKCIVSPQAN RPVMGIVQDT LLGCRKMTKR DTLIEKDVFM NILMWWEDFD GKVPAPTILK PRPIWTGKQV FNLIIPKLIN
0601: LIRFSAWHAE TENGFTTPGD TVVRIEKGEL LSGTLCKKTL GASSGSLIHV IWEEVGPDAA RKFLGHTQWL VNYWLLQNGF SIGIGDTIAD ADTMEKINET
0701: IANAKIEVNG LIKQAQEKEL EPEPGRTMME SFENRVNQVL NKARDESGSS AQKSLSESNN LKAMVTAGSK GSFINISQMT ACVGQQNVEG KRIPFGFVDR
0801: TLPHFTKDDY GPESRGFVEN SYLRGLTPQE FFFHAMGGRE GLIDTAVKTS ETGYIQRRLV KAMEDIMVKY DGTVRNSLGD VIQFLYGEDG MDAVWIESQK
0901: LDSLKMKKDE FDNVFRYELN DMNWKPNYML PDHVEDLKTI REFRNVFEAE LQKLEVDRLQ LGQEITTTGE GTWPMPVNLK RLIWNAQKTF KIDLRKPSDM
1001: HPMEIVEAID KLQERLKVVP GDDAMSIEAQ KNATLLFNIL LRSTFASKRV LKEYRLTKES FEWVIGEIES RFLQSLVAPG EMIGCVAAQS IGEPATQMTL
1101: NTFHYAGVSA KNVTLGVPRL REIINVAKKI KTPSLSVFLK PGVNSRKESA KNVQCALEYT TLRSVTHATE IWYDPDPLGT LIPEDVDFVR SYYEMPDEDV
1201: DPDKMSPWLL RIELNREMMV DKKLSMADIA EKINHEFDDD LSCIFNDDNA DKLILRVRIA NDEAPPKGGE AQGESAEDDV FLKKIEGNML TEMALRGIPD
1301: INKVFIKKGK VNKFDEKEGF KGEEEWMLDT EGVNLLAVMC HEDVDPSRTT SNHLIEVIEV LGIEAVRRSL LDELRVVISF DGSYVNYRHL AILCDMMTYR
1401: GHLMAITRHG INRNDTGPLM RCSFEETVDI LLDAAVYAES DYLRGVTENI MLGQLAPIGT GGCGLYLNDQ MLKQAIELQL PSYIDTLDYG VTPARSPSGT
1501: PYHDGMMSPL LSPNFRVSPL TDAQFSPYVG GMAFSPMPSN YSPSSGGYSP SSPVFSPGPG HSYSPTSPSY SPASPSYSPA SPSYTPGSPS YSPSSPSYSP
1601: TSPSYSPTSP SYSPTSPSYS PTSPAYCPTS PSYSPTSPAY CPTSPAYSPT SPAYCPTSPA YSPLSPSYNP TSPSYSPTSP SYSPTSPSYS PTSPSYSPTS
1701: PSYSPSSPTY SPTSPSYRPT SPSYSPTSPA YSPSSPGYCP TSPSYSPTSL SYSPSSAKYS PSNIYSPSSP RMMSPYSQTS PNYSPTSPSY SPTSPSYAQP
1801: SPSYSPASPI TTSGGPSPDY TPTSPNYSPT ASYSPTAPGY SPISTEPQTS DKDEETAP
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.